Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5466 ATGGAACATTTATGCGATGATAACTTTGAAGGATCTAAGGAAGAAAGACAGATTTTTACAGAGGTTTTTTTTGGTGATGACACTTTTCAGTCTAGTCAGAGGGGTGTTGTTTCTGGAGCCATCAAACTTGAACATGAATCCACTATGAACACATTTAAATCATTTGGTTCTAGTAATGAAAACTCGATCATATTGCGTCCTTCGTCTTCAAGATTTACACATCATGAGGAGGATGTTAATATAATTCAGCATTCCAATGAGACTGCCCTGGGGTGTTTGCCCGAGAGTTTAACTTGTGAAGACCTGAATGATGAGATTGTAAATGTTAAACGTATGAAGTTTTCTCTACATGAACTTCCTTGTAGTAGATCTAATTCAGAACATGTTTTGGGTTCATCTGGAATTCCGAAAGTAGTAATTTCCAACCCGCCTTTAATTTCCAACCCGCCTTGTGCTGCTACAGACTGTGATAGTGACCCAATTGCATTTCGGACAGTTGAATCATCTAAACTTGGCGTGGTATCTAGTTGCTGTCTATTGAAGCATAACTTGGTACAGAATAAATATGCTTTGAATAATGATGTAGATGTTACAAACTGTAAATCTGAAACTGCAAATGGGAACATCACAAAAGAAATGTCTGCAAATAAGGTAGTTGCTTCTCCTGTATCCCAGGAGAGCTCGGCAAACAGGCTAGCTGTAACGAGTTCATCAATCACTGTTGCGAAGAAGTCTTCCTATCCTTTAAAAACTGAGGAAATGGCAAAAGGGTTTCAATCTTCTAATATGATCATCTCAAATTTAGTGTCAAAGCTAGACAAAGAGGATCCCCGATCCATACTGCAGTTTCACATTGTGCAGTTGCTTACGATGTCAGGTTGGTCTATTGGGAAGCATCAACGGCGTTGTAGGCGGTGGATGGAGTCAGTCTACAAGACACCAAAGGGAAAAACTATTAGGGAATTTACCAAAGTTTGGAGATTATGTGGCCATCTTTTGTCTGTTGAAAAATGCAAAGTACCATATGAAGGCCGTAAGGAATGGGCGGGTATCAGTGATTTCTGGTCTGATCTATTGAGTACTCTGACAAATGTTGATAAATCAAAAACCCAGTCAGAAACAGCAGCTATGTTGGCTTATCAATGGTGGCTTTTGGATCCTTTTGTAGTGGTTATATATTTTGATAGAAAGATCGGTGCTCTGAAAAAGGGAGAGGTAATAAAAGCATCTAGTAGTTTAGTTTCTAGTAAGGGTAAAATGGCATATGATCCAGTTGATTCAGCCTGGCAAGATAGTTCTTGTGCTCATTCTGATCAAAAGCACGACCAAGCCATTTTCTGTGACTCTTCAACAGCAACCGGAGCCACTAAAATATCTGCTTTTGTGATAAACAATCATGCTTGTAATCAGAAATCTGGTGGCAATCAAGAAGATATGTATGTTGGAGAACACAAACCAAACGTCATAGAAAATCCATGTAGGGAAATGTCAGTGAGCAAAAGTAGTATGGATCTAGTGTCCTTACCTGCTTGCGCATTGGGCAGCACTGTTACCCAATCAAATGCTTCCTCTTTCGATGTTCTTCCAAGCTCAGTAAATTTGGACTTGGATTCTAAAGTGAATGCTGTTCATCATGATAAACTTGGAGATTCCAAAAGCTTTGATAAGTATACATCAGATAATCGGTCTGAATATAGTGAAGAAGAGGGGAGGAAAGTTTCAGTGGCTTCTGTATTTGGGAAAGATAGTACATGGTCCTCAGCTAATGGTATTCTTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGATATCTCAAATCAAACTGAGTATGTTATACCATAGTGACATACTGGGATCAACTATCACTGACCAGGTGCAGTCGTTGAATGGTGATGCATGTGGCACTCAAGCTGGGTTGGAAGAAGTTCAGGATTATGTAGTTGACAGTGTGGGAAAAAAAAGGAACTGCAGGAAGTTATCGGGCACTGCAAACCAGCGACATATCAGGAAAACAAAAAAGTCCAATAGGTGCCATATTGAAGATGATGATCTTTTAGTGTCGGCAATATTCAAGAATAAGGACTTCAATCCAAAGCCAAACCGAGGCAATTCTAGAGCTAAACCTGGCAAATCAAGGGGCTTGAGAAAGCTTAAAAGCCATAAAGGTCGCTGTAGGTTGCTACCAATGAACCCTTGTTATGGAGGGAAGCACAATAAGGATGGGAAGAAGTATTATCTTGGGGAAAGGACTCTCTTGTCCTGGTTGATTGAGAATGGGGTCATATCTTTAAATGATATCATTCAATATCGAAACCCTAAAGATAATTCTGTCACTAAGGATGGTAAAATCACTAAAGATGGTATTGTTTGTAAGTGTTGCAGCGAAGTGCTTACATTATCAGAGTTCAAGAATCACGCTGGGTTAACAGTGGCTCGCCCTTGCTTGAATCTTTTCATGGAGTCTGGTGAGCCCTTTACACTTTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCAAAATCAACCTGCGAATGTCGTTGATAATGACAGAAATGATGACTCGTGCGGGTTGTGTGGTGAGGGAGGTGAGCTGATATGTTGTGATAACTGCCCTTCTACTTTTCACCTGGCTTGTTTGTCCGCTCAGGAGATCCCTGAAGGCAACTGGTACTGCTTAAACTGCACTTGTCGGATTTGTGGAAATTTGGTCATTGATAAAGAGGCTTCAGATGCAAATGATTCATTACAATGTTCACAATGCGAACATAAATATCATGAGAAATGCTTAGGAGAAGGAGCTAACCAAGAAGGAGCAGTTTCAGACACTTGGTTTTGTAGTCAGAGTTGTCAGGAGGTATACTCTAGTCTCCAATCTCAGGTGGGGCTAGTTAATCAAGTTGCCGATGGCTTTTCATGGACGCTTCTTAGATGCATACACGATGATCAAAAGGTTCATTCTGCTCAGTGGTTATCCCTAAAGGCAGTATGCAATACAAAATTAGCTGTTGCCCTTACCATCATGGAGGAATGTTTCGTGTCAATGCTAGATCTAAGAACAGGCATCCACATGATACCCCAAGTTTTATACAATTGGGGGTCTGATTTTGCTCGTCTGAATTTTCAAGGGTTTTACACCGTGGTGTTGGAGAAACAAGATGTGTTAATATCGGTAGCATCTATCAGAGTGCATGGGACTACAGCTGCAGAGATGCCTCTAATTGCAACTTGCAGTCGGCATCGTCGCCAAGGAATGTGTCGACTCCTTGTGAACTCAATTGAAGAGATGTTAATATCTGTCAAGGTAGAAAAGCTTGTGGTATCAGCCATTCCCGATTTGGTGGAGACATGGACCAAGGGCTTTGGATTTGTACCTGTAGGTGACATTGAAAAGCGGGGATTAAAAAAGCTCAACTTAATGGTTTTTCCTGGAACAGTGTTACTTGAAAAATCCTTATATGGCGGCAAGAAGAAAAATGAAGGACCATGTGATCAGTCAACTTTAGCATCAGATGAATTGTTTGACGTAGAAATCTGTTCTGAAGGAATGGCCATAGCCGAATCATTGCCCCAAGATTTTGGTGGTGTAGGACTTATTGAGGACAAGAATATCAAAGTAGACAAAGTTGAGGAAAATGCTTTGCACGAACATGTTTCTCTGTCGTGCAAAACATTTTCTGGCAACAATTTTGACACAGTTTCTAATTTTGAATGCTCTGTGATGTATGATGAAACTGCTAGTTTTGGAACATTAGCAAACTCTGCAAAATCAAAGGAAAGTTGA 3792 0.4043 MEHLCDDNFEGSKEERQIFTEVFFGDDTFQSSQRGVVSGAIKLEHESTMNTFKSFGSSNENSIILRPSSSRFTHHEEDVNIIQHSNETALGCLPESLTCEDLNDEIVNVKRMKFSLHELPCSRSNSEHVLGSSGIPKVVISNPPLISNPPCAATDCDSDPIAFRTVESSKLGVVSSCCLLKHNLVQNKYALNNDVDVTNCKSETANGNITKEMSANKVVASPVSQESSANRLAVTSSSITVAKKSSYPLKTEEMAKGFQSSNMIISNLVSKLDKEDPRSILQFHIVQLLTMSGWSIGKHQRRCRRWMESVYKTPKGKTIREFTKVWRLCGHLLSVEKCKVPYEGRKEWAGISDFWSDLLSTLTNVDKSKTQSETAAMLAYQWWLLDPFVVVIYFDRKIGALKKGEVIKASSSLVSSKGKMAYDPVDSAWQDSSCAHSDQKHDQAIFCDSSTATGATKISAFVINNHACNQKSGGNQEDMYVGEHKPNVIENPCREMSVSKSSMDLVSLPACALGSTVTQSNASSFDVLPSSVNLDLDSKVNAVHHDKLGDSKSFDKYTSDNRSEYSEEEGRKVSVASVFGKDSTWSSANGILKKKMRRKCKRISQIKLSMLYHSDILGSTITDQVQSLNGDACGTQAGLEEVQDYVVDSVGKKRNCRKLSGTANQRHIRKTKKSNRCHIEDDDLLVSAIFKNKDFNPKPNRGNSRAKPGKSRGLRKLKSHKGRCRLLPMNPCYGGKHNKDGKKYYLGERTLLSWLIENGVISLNDIIQYRNPKDNSVTKDGKITKDGIVCKCCSEVLTLSEFKNHAGLTVARPCLNLFMESGEPFTLCLLQAWSAEYKARKSQNQPANVVDNDRNDDSCGLCGEGGELICCDNCPSTFHLACLSAQEIPEGNWYCLNCTCRICGNLVIDKEASDANDSLQCSQCEHKYHEKCLGEGANQEGAVSDTWFCSQSCQEVYSSLQSQVGLVNQVADGFSWTLLRCIHDDQKVHSAQWLSLKAVCNTKLAVALTIMEECFVSMLDLRTGIHMIPQVLYNWGSDFARLNFQGFYTVVLEKQDVLISVASIRVHGTTAAEMPLIATCSRHRRQGMCRLLVNSIEEMLISVKVEKLVVSAIPDLVETWTKGFGFVPVGDIEKRGLKKLNLMVFPGTVLLEKSLYGGKKKNEGPCDQSTLASDELFDVEICSEGMAIAESLPQDFGGVGLIEDKNIKVDKVEENALHEHVSLSCKTFSGNNFDTVSNFECSVMYDETASFGTLANSAKSKES* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5466 1263 SUPERFAMILY FYVE/PHD zinc finger 899 950 IPR011011 -
Psa5g5466 1263 MobiDBLite consensus disorder prediction 696 715 - -
Psa5g5466 1263 SMART PHD_3 858 899 IPR001965 -
Psa5g5466 1263 SMART PHD_3 900 954 IPR001965 -
Psa5g5466 1263 Pfam PHD-finger 859 900 IPR019787 -
Psa5g5466 1263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 903 958 IPR013083 -
Psa5g5466 1263 SUPERFAMILY FYVE/PHD zinc finger 841 899 IPR011011 -
Psa5g5466 1263 CDD PHD1_AIRE 859 898 - -
Psa5g5466 1263 PANTHER INCREASED DNA METHYLATION 1 2 1197 - -
Psa5g5466 1263 PANTHER INCREASED DNA METHYLATION 1 1201 1257 - -
Psa5g5466 1263 Gene3D - 1003 1142 - -
Psa5g5466 1263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 848 902 IPR013083 -
Psa5g5466 1263 Pfam Tify domain binding domain 781 831 IPR032308 -
Psa5g5466 1263 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1006 1132 IPR016181 -
Psa5g5466 1263 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1006 1156 IPR000182 GO:0016407
Psa5g5466 1263 ProSiteProfiles Zinc finger PHD-type profile. 856 901 IPR019787 -
Psa5g5466 1263 PANTHER PHD FINGER PROTEIN 12 1201 1257 IPR042163 GO:0003714|GO:0045892
Psa5g5466 1263 PANTHER PHD FINGER PROTEIN 12 2 1197 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5466 Psa-Chr5 473312503 473320068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5466 1 44 PHD Transcription Factor Family AT3G14980 52.273 7.40e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa5g5466 TDBD 8.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5466 - - mtr:MTR_2g078040 1986.46