Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5458 ATGTCGTTGATGAAGGTTTTTCGATCTGGCAAATTCTCGAGTTCCTTAAACGAGGTTCCATCTCTCGATGCTACCGGCGATGACCGGAAAGGAACCGCCGTACGTGAATCGGAGGACGGAACTGATTGGTCAACCATGCTGCCGGATCTACTTGCGGAGATTATTAAACGAGTTGACGCCGCCGAGGATCAGTGGCCGCACCGTCAAAACGTCGTCGCTTGCGCCTGCGTTTGCAAACGGTGGAGAGATGTTACACGGGAGACCGTACGGTCACCGCGTGACGGCAGAATCACTTTTCCGTCTTGTCTTAAACAGCCAGGACCACGCGACCTACCTCATCAATGTCTTATAAAGCGGGATAAAAAGACCTCCACATTTTACCTCTATCTTTCCCTTACATCATCATACACAGATAAAGGGAAGTTTCTGTTGGCAGCTAAAAGATATAGGTATGGTACCCATATTGAATATGTTATATCGCTCGATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTCGGCAAGCTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCGTCCACCCCATAATGGTGCCAAACCATCATGTGCCAAAGCTAGCCGTCGTTTTGCAAGCAAACAGATAAGCCCTCATGTTCCTCAAGTACCTGCTGGTAACTTTGAGGTGGGGAATGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGAATGACCTGCTCTCTGAAGTCTACTGTCTCATCAATGGGTGAAAGCTCAGACGGCAAGACGCACTCTTGCTCTCTGAAGTCTACTGTCTCATCAATGGGTGAAAGGGCAGATGGCAAGTCTTTCGATGGCCACAAGATGCACCCTTGCTCTCTCAATTCTGCTGTCTCACCAAAGGGTAAAAGCTCAGATTACAAGTCTTTCGCCGACCACATGATGCCCCGTAAAAAACCTTCTTCCCACACAATCTTGAAAAACAAAGCTCCAAGGTGGCACGAACATTTGCAATGCTGGTGCTTGAACTTCCATGGTCGTGTGACAGTGGCATCAGTGAAGAACTTTCAGCTGATTGCCACTACGGACCAGAGCCAACCCGAAGGAAAAGGAGATCAAGAAACTGTTCTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACCATGGACTATAGACAGCCCTTATCCGCCTTCCATGCATTTGCGATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1254 0.4745 MSLMKVFRSGKFSSSLNEVPSLDATGDDRKGTAVRESEDGTDWSTMLPDLLAEIIKRVDAAEDQWPHRQNVVACACVCKRWRDVTRETVRSPRDGRITFPSCLKQPGPRDLPHQCLIKRDKKTSTFYLYLSLTSSYTDKGKFLLAAKRYRYGTHIEYVISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSCAKASRRFASKQISPHVPQVPAGNFEVGNVSYKFNLLKSRGPRRMTCSLKSTVSSMGESSDGKTHSCSLKSTVSSMGERADGKSFDGHKMHPCSLNSAVSPKGKSSDYKSFADHMMPRKKPSSHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLIATTDQSQPEGKGDQETVLQFGKVGDDTFTMDYRQPLSAFHAFAICLTSFGTKLACE* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5458 417 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Psa5g5458 417 Pfam Tub family 103 412 IPR000007 -
Psa5g5458 417 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 28 262 - -
Psa5g5458 417 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 291 417 - -
Psa5g5458 417 MobiDBLite consensus disorder prediction 261 279 - -
Psa5g5458 417 SUPERFAMILY Tubby C-terminal domain-like 95 417 IPR025659 -
Psa5g5458 417 Gene3D - 35 90 - -
Psa5g5458 417 MobiDBLite consensus disorder prediction 18 39 - -
Psa5g5458 417 Pfam F-box domain 48 86 IPR001810 GO:0005515
Psa5g5458 417 MobiDBLite consensus disorder prediction 23 37 - -
Psa5g5458 417 SUPERFAMILY F-box domain 39 87 IPR036047 GO:0005515
Psa5g5458 417 PANTHER TUBBY-RELATED 28 262 - -
Psa5g5458 417 PANTHER TUBBY-RELATED 291 417 - -
Psa5g5458 417 Gene3D Tubby Protein; Chain A 98 285 IPR025659 -
Psa5g5458 417 Gene3D Tubby Protein; Chain A 286 417 IPR025659 -
Psa5g5458 417 ProSitePatterns Tub family signature 2. 402 417 IPR018066 -
Psa5g5458 417 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Psa5g5458 417 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Psa5g5458 417 PRINTS Tubby superfamily signature 225 252 IPR000007 -
Psa5g5458 417 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Psa5g5458 417 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Psa5g5458 417 PRINTS Tubby superfamily signature 374 393 IPR000007 -
Psa5g5458 417 PRINTS Tubby superfamily signature 395 417 IPR000007 -
Psa5g5458 417 MobiDBLite consensus disorder prediction 261 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5458 Psa-Chr5 472775144 472778375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5458 41 417 TUB Transcription Factor Family AT1G53320 66.667 4.01e-179 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Psa5g5458 Tub 8.1e-98 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5458 K19600 - gmx:100801919 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5458 5 472775144 472778375 Psa5g5458 5 472775144 472778375 ECH