Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5451 ATGGATGATGCTAGAGGTCCACCCAAAAGAATTAGAAGAAATCGCCAATCTTCTGCATCTTCCTCCAGTTCAAGACACACTAATGGAGTTGTTACTAGCGATGATCTATCATCTCCCTTTCAAGCACTGTATAATCCAGCACCTAATAGAAATGAAAGTTTATTTGAGAGTGCAAATATGGGTTTCCAGAGATACTATAATGAAACAATTGGCATAAGGTTTTCCAATCCTTTTCCTTCCTTCCGTCAACAACATCATCGTTATGAAATTCCAACAATTGCTATGCATGAAATTCTGCCAAATCCTCCACAGGATATTGCTATTTTAAATGGAGAAGGGGGAAATCAGGCTGATCCATATCGAGGAATGCGCTTGAACATTGAAGACATGTCTTATGAGGAGCTTCTTGCACTTGGTGAGAATATTGGTAGTGTTAACACTAGTTTATCAGAGGAAACAATTGCTGCTCTACTGAAGACAAAAGAATATACACCAAAACCCATTGTTCTTAACTTGGAAGAGTTACCATCTGAAGATCAAGAATCTGATGCTTGCATTATATGCCAAGAAGAATTTGAAAGTAAGGAAAATGTTGGAATTCTTGCATGTGAGCATGCATTTCACGTCGGGTGCATAACGCAATGGTTGTTGATCAAAAATAAGTGTCCAGTATGCAAATCTGAAGCTTTGACTCCTGCAAAGGTTGAATAG 711 0.384 MDDARGPPKRIRRNRQSSASSSSSRHTNGVVTSDDLSSPFQALYNPAPNRNESLFESANMGFQRYYNETIGIRFSNPFPSFRQQHHRYEIPTIAMHEILPNPPQDIAILNGEGGNQADPYRGMRLNIEDMSYEELLALGENIGSVNTSLSEETIAALLKTKEYTPKPIVLNLEELPSEDQESDACIICQEEFESKENVGILACEHAFHVGCITQWLLIKNKCPVCKSEALTPAKVE* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5451 236 SMART ring_2 185 225 IPR001841 -
Psa5g5451 236 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 33 108 - -
Psa5g5451 236 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 104 233 - -
Psa5g5451 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 33 108 IPR045191 GO:0061630
Psa5g5451 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 104 233 IPR045191 GO:0061630
Psa5g5451 236 Pfam Ring finger domain 184 226 IPR001841 -
Psa5g5451 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 230 IPR013083 -
Psa5g5451 236 MobiDBLite consensus disorder prediction 13 34 - -
Psa5g5451 236 MobiDBLite consensus disorder prediction 1 34 - -
Psa5g5451 236 SUPERFAMILY RING/U-box 178 231 - -
Psa5g5451 236 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5451 Psa-Chr5 472538433 472541324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5451 118 230 C3H Transcription Factor Family AT2G15530 49.138 3.47e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5451 K19041 - tcc:18594097 160.229