Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5449 ATGATGAAGAGGAACAATATGAACACAAACATGAAAAACTATCATCAAAACTATTATAATAGTCCTATTATCAGCAATAAGAGTCCTTCATCATCAGAAGATTACATGATGAATGGTTTTCATCCATGGCCACCAAGATCATACACATGTAGCTTTTGTAGAAAAGAATTCAAATCGGCTCAAGCGCTTGGTGGTCACATGAATGTTCATAGGAGAGATAGAGCAAGGCTTAGACAATCATCACCACCAACAAATCATCATGAACTTCAAACTCAAACTCAAACTCAAGGTTCTTCTATGCTTAACCTTAATAATAACCCTAATAACTTTTTCTCAAACAACTCATCATTCTTGCAACAACCATCTTCATCATCTTCTTCCTCTTTAGCAACAACTCTTAAGCCTATGACTTGCACATTGCCTTTGTTTGTTGTGGATGGTATTTTGTTGAACCCTAGTTTGAGCGCAATGAATTCCGAGAAATCGAAGATGGAAGAATGTGATGTTTTTGCATGTGAAGAGGATCATGAGTGTAGAATGTTGAAGAAAGGTGAGAATATTATAAGGATGGATTTGGAGATAGGTTTGCCTGGAGATTATGATAACTTGGATCTTGAGCTTCGTTTGGGTACTACTACTTATTCTAACTAG 651 0.3625 MMKRNNMNTNMKNYHQNYYNSPIISNKSPSSSEDYMMNGFHPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPTNHHELQTQTQTQGSSMLNLNNNPNNFFSNNSSFLQQPSSSSSSSLATTLKPMTCTLPLFVVDGILLNPSLSAMNSEKSKMEECDVFACEEDHECRMLKKGENIIRMDLEIGLPGDYDNLDLELRLGTTTYSN* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5449 216 Gene3D Classic Zinc Finger 43 109 - -
Psa5g5449 216 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Psa5g5449 216 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 214 - -
Psa5g5449 216 SMART c2h2final6 48 70 IPR013087 -
Psa5g5449 216 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Psa5g5449 216 PANTHER OS07G0101800 PROTEIN 3 214 - -
Psa5g5449 216 Pfam C2H2-type zinc finger 48 72 - -
Psa5g5449 216 SUPERFAMILY beta-beta-alpha zinc fingers 45 74 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5449 Psa-Chr5 472269501 472270479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5449 34 210 C2H2 Transcription Factor Family AT3G23130 39.891 1.14e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g5449 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5449 - - gmx:100781722 167.933