Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5434 ATGTCCCTCTCTCTAATTTTTCTCATATCCAATATTAAACCTAGTTATAGTTTTAGCAAAGTGTTAACAAATTTTCACAACCAAAAAAGAATGGAGAATCTTGGTTGGTTTCCTACAAATGGCAAAAAGGCAATGGAAGAAGAGCTTATTAGAGGACGTGACATGGCAAATCAATTACTAGAAGTACTTACTTTTGAAGATAAGTCTAATATTATTAGACAAGTCAAAGGGTCAAACTCAAAATCATCAAAAGTGTTATCTAAAGATGTTGCTCAAGATCTTGTTAGAGAAGTGCTCAAATCATTGACAAATACACTTCTATATTTGAACAAGAGAGAAGACTCAAATGATGAGTCTATAGTAGTTAGAGATTTTTCTTTCTCAACCAATGGCCACACGATGGAGGAGGATTTGGATGGAGCTTACATAGAACTTCAAACTCTCAACACCAAAAGTTCAAAGGGAACGAAAAAGAGAAAGTTATGTTCACCAACATGGGAGAAAACAACTTCAGTATTGATTGATGATGGTCATACATGGAGAAAATATGGACAGAAAATGATAACAAATACAAAATTCTTCAGGAGCTACTATAAATGCACAAACAACGATCAACATTGTAAAGCAATGAAACATGTTCAGAGAACTCAAGAGAATCCTCCATTATATAAAACTACATATTATGGTTATCACACTTGCAAAAGTTATATTCAATCGGATACAAATTGGGAACCAATTTTGTCATGTCACTCTTCTATGTTACTTAGTTTTGATAATAACATTCCAAATAAACAAGAAAATTTGTTACCGCCATCACCACCATCACCATCACCATCATTACCACTTCTTATATCTTCAAAAGAGGATTCCATCAAATCAATTCAAGATGATAATTTTCCTCAAAACCAATTGTTCCCTTATGAGAACCTCCAATTATGTGAATTCGATGTTTATACAGATTATTTGACACATGGCAATATTTTATCATTGAGTGAATCTTTTTAG 1005 0.3274 MSLSLIFLISNIKPSYSFSKVLTNFHNQKRMENLGWFPTNGKKAMEEELIRGRDMANQLLEVLTFEDKSNIIRQVKGSNSKSSKVLSKDVAQDLVREVLKSLTNTLLYLNKREDSNDESIVVRDFSFSTNGHTMEEDLDGAYIELQTLNTKSSKGTKKRKLCSPTWEKTTSVLIDDGHTWRKYGQKMITNTKFFRSYYKCTNNDQHCKAMKHVQRTQENPPLYKTTYYGYHTCKSYIQSDTNWEPILSCHSSMLLSFDNNIPNKQENLLPPSPPSPSPSLPLLISSKEDSIKSIQDDNFPQNQLFPYENLQLCEFDVYTDYLTHGNILSLSESF* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5434 334 Gene3D WRKY domain 163 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g5434 334 SUPERFAMILY WRKY DNA-binding domain 169 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g5434 334 Pfam WRKY DNA -binding domain 175 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g5434 334 ProSiteProfiles WRKY domain profile. 169 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g5434 334 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 37 333 - -
Psa5g5434 334 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 37 333 IPR044810 GO:0003700
Psa5g5434 334 SMART WRKY_cls 174 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5434 Psa-Chr5 471185585 471189871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5434 153 270 WRKY Transcription Factor Family AT1G66550 37.903 4.26e-21 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa5g5434 WRKY 1.3e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5434 - - gmx:100792193 243.817