Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5417 ATGAATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAATTCGTGTGAAATTTAGGCTAGGGCCAGCAACACCTGTTCAAGATCGCTTTCACTTTAATCAGTACACATGGCTTGTTGGCTTCTCAATGGATCATGATTGGTGTGCCGTGATGAAAAAACTCTTGGACATTATATTTGAAGGTGAAGTTGATACTGCAGAACATACCTCTCCCGAGCTTGAGTTGTTAAACATGGGTCTTCTACACAAAGCTGTAAAGAGAAATTGCAGGCCTATGGTAGAATTACTGTTGAACTTTATGCAAATTAATGCGTCGGATGGTGGAGACAATAAAGAGATGCAAGTCAATAAGCCCCCTGACAGATTCTTGTTTAGACCCGAATGTGTTGGGCCTGTTGGAGTGACGCCCCTTCATGTTGCAGCAAGTATGAGTGGTTATGAAACTGTATTGGATGCTTTGACCGATGATCCGGGAATGGTTGGAATTGAAGCATGGAAAAGTGCAAAGGACAATACAGGTTCTTTAGTTGATATCAAATTGGAGGGTAATCATATCAATGGCGTAGTGCCTAGTAATTGGACCAGTTTGATGAATATGAAATTGTTTGATCTGAGTAGAGCATTTTTAACAAAATTTAAAACACAAACTACCATCTCTGATCTTCATGTTCTGATATCTACATCATTTCACCCTGCCTATGTTACTGCTGAAAGAGTTAAGAAAGCTAAGAATTTAGAGTTACTTTTGACTGCCGGAATTGGTTCTGATCACATTGATCTCAATGCTGCGGCTGCTTCTGGTTTAATTGTCGCAGAGGTCACAAGAAGCAACACAGTATCTGTTGCTGAGGATGAGCTCATGAGAATTCTCATTATGGTGAGGAATTTTGTGCCTGGTTACCATATCAGTCTATTACAGGAGAATGGGATGTTGCTGACATTGCACATAGAGCCTATGATCTTGAAGGAAAGACGATAG 978 0.4039 MNFIQEMGWLLHRIRVKFRLGPATPVQDRFHFNQYTWLVGFSMDHDWCAVMKKLLDIIFEGEVDTAEHTSPELELLNMGLLHKAVKRNCRPMVELLLNFMQINASDGGDNKEMQVNKPPDRFLFRPECVGPVGVTPLHVAASMSGYETVLDALTDDPGMVGIEAWKSAKDNTGSLVDIKLEGNHINGVVPSNWTSLMNMKLFDLSRAFLTKFKTQTTISDLHVLISTSFHPAYVTAERVKKAKNLELLLTAGIGSDHIDLNAAAASGLIVAEVTRSNTVSVAEDELMRILIMVRNFVPGYHISLLQENGMLLTLHIEPMILKERR* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5417 325 Gene3D - 192 311 - -
Psa5g5417 325 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 214 297 - -
Psa5g5417 325 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 173 IPR044817 GO:0003677
Psa5g5417 325 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 1 173 - -
Psa5g5417 325 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 209 283 IPR006139 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5417 Psa-Chr5 470260309 470262131 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5417 1 173 SBP-box Gene Family AT3G60030 48.588 4.04e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5417 - - gmx:100776125 288.885