Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5379 AATCATTCAAGGGAGTGGATTAAGTGGACCAATTCCTTCCAAAATTTCACTTTTGAGAAACTTAACTGACTTGAGAATTAGTGATTTGAATGGATCTGAATATGCACCTTTGCCACAACTTGATAATCTGACATTGTTAGAAAAACTGATTATGAGGAATTGCAACATCAATGGAACTCTACCTGAAAATCTTAGTACTATGACATCATTAAAATACTTAGACTTCAGCTTTAACAAATTCCGTGGAAAAATTCCGAGTACCTATGCTTACATAAATGGTGTGAAATTCATATTTTTAACTGGAAACCTTCTCACAGGACAGATACCTTCTTGGAAAAAGAACATCGACGTAGATCTTTCATACAATAACTTCAGCATCATCCAAGAAAGTCAGCTATGTCAAAGTGATAAATTAAACTTGTTTTCTACCTCATGGGCAAACAATAACATAGGAACAGTTTCATGTTTGAGAGAATGTCCTAAAAAACCCTCATACTCCCTTTATATAAATTGTGGTGGAAAGCAAGAACAAGTCAATGGAGCAAGTTATGATGACGATTCAGATTCACCTGGACCAGCTAAACTCCATGTCAGCCCAACAGGAAAATGGGCATTTAGCACCACTGGTATGTTTATTGATGGTGATCAACTTGGAGAAACTTATTCCCCGCCAAAATTTACTCCACTTACTATGGAAGATGCTAAGTTGTACATGAGTGCACGTGGTTCTCCCATTTCTTTGACTTATTATGGGTTTTGTCTGGAAAATGGAAGCTACACAGTAAATCTTCATTTTGCTGAAATAATGTTCACAGACGATCAAACTTATGGTAGTCTTGGAAGACGTGTATTTGATATCTACCTTCAGGGAAATCCGGTGCAAAAGGACTTCAATATTGCAAAAGAAGCGGGAGGAGTTGGTAAGAAAGTCATAAAACAGTTCAAAGATGTTTCTGTTACTAATAGTACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGGACACAGTCTCTTCCAAATAGATCAGTATTTGGTCCTCTTATATCGGCCATATCAGTGGAATCTAACTCTCCACCTGGAAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCAACAACAATTGTTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTCAGGAAGAAAGAATCATTAGCAAGAGAGTTGAAGAGTTTGGACGTTCAAACGGGGTTATTTACCTTAAGACAAATCAAAGCAGCTACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGCTTTGGTCCCGTGTATAAGGGATGTTTACCCAATGGGACATTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTCTTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCCTATCTTGTTAAACTCCACGGTTGCTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACCTGGAAAACAATAGTCTAGCTCGGGCTTTATTTGGTCCAGAGGAACACCAAATTAAATTAGATTGGCCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAAAGGTTTAGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTACTGCTTGATACGAATCTTGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACAAGAATTGCTGGTACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGCTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAAGAGCAACACCATGTATCGATCGAAGGAGGAAGCTTTCTATCTTCTTGATTGGGCACATTTGTTGAAGGAGAGGGGTGATCTAATGGAGCTAGTTGATAGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAACGTGGCTCTTCTATGCACGAATGTGACTTCAAACCTTAGGCCGTCCATGTCGTCGGTGGTAAGTTTCCTTGAAGGAAGGAATGCGGTTCCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGGAAAGAAGTTAGAAGTAATGAGACAGTATTACTACCAGAAGGAAGAAAATAATATAAGTAGTACCTCACAAAGTCAGAGTATATTGAATGATGGGTCATGGACTGCTACATCTTCATCAGCTGTAGACCTTTATCCTGTCCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA 2314 0.3868 IIQGSGLSGPIPSKISLLRNLTDLRISDLNGSEYAPLPQLDNLTLLEKLIMRNCNINGTLPENLSTMTSLKYLDFSFNKFRGKIPSTYAYINGVKFIFLTGNLLTGQIPSWKKNIDVDLSYNNFSIIQESQLCQSDKLNLFSTSWANNNIGTVSCLRECPKKPSYSLYINCGGKQEQVNGASYDDDSDSPGPAKLHVSPTGKWAFSTTGMFIDGDQLGETYSPPKFTPLTMEDAKLYMSARGSPISLTYYGFCLENGSYTVNLHFAEIMFTDDQTYGSLGRRVFDIYLQGNPVQKDFNIAKEAGGVGKKVIKQFKDVSVTNSTLEIRLYWAGKGTQSLPNRSVFGPLISAISVESNSPPGSISAGAVVGIVVATTIVIILVFGILWWKGCFRKKESLARELKSLDVQTGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWPTRQKICVGIAKGLAYLHEESRLKVVHRDIKATNVLLDTNLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTMYRSKEEAFYLLDWAHLLKERGDLMELVDRRLGSDFNKKEAMVVINVALLCTNVTSNLRPSMSSVVSFLEGRNAVPEFVSDSSEVMDGKKLEVMRQYYYQKEENNISSTSQSQSILNDGSWTATSSSAVDLYPVHLDSSYWEERN* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5379 770 Gene3D Ribonuclease Inhibitor 1 166 IPR032675 -
Psa5g5379 770 Pfam Protein tyrosine and serine/threonine kinase 425 694 IPR001245 GO:0004672|GO:0006468
Psa5g5379 770 ProSiteProfiles Protein kinase domain profile. 423 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5379 770 SMART serkin_6 423 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5379 770 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 114 - -
Psa5g5379 770 Pfam Malectin domain 166 351 IPR021720 -
Psa5g5379 770 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 56 - -
Psa5g5379 770 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 150 731 - -
Psa5g5379 770 SUPERFAMILY L domain-like 2 145 - -
Psa5g5379 770 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 40 114 - -
Psa5g5379 770 Gene3D - 167 357 - -
Psa5g5379 770 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Psa5g5379 770 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 56 - -
Psa5g5379 770 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 150 731 - -
Psa5g5379 770 CDD STKc_IRAK 429 696 - -
Psa5g5379 770 Gene3D Transferase(Phosphotransferase) domain 1 499 707 - -
Psa5g5379 770 Gene3D Phosphorylase Kinase; domain 1 388 498 - -
Psa5g5379 770 SUPERFAMILY Protein kinase-like (PK-like) 406 708 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5379 Psa-Chr5 468450078 468457337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5379 2 723 Receptor kinase-like Gene Family AT1G53420 56.871 0.0 807
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa5g5379 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5379 - - gmx:732563 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5379 5 468450078 468457337 Psa5g5379 5 468450078 468457337 ECH