Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5378 ATGATATCTATAGCTAAAAGCATATATGCTCAAAGACCACCACCAAGGAACAATTTACATTGCCACTTGTCAAACAATGCAAGATTGACAACACGAGAAGTCTTTGACACCCAAATCACCGTTACACTTTGTGTTCTAAAGTCACAAAATCTTTCTGGCACACTTCCAAGAGAATGTGTGAAATTACCTTACCTTCAACAAATTGATCTCACACGCAACTACCTTAACGGTACAATCCCTCCAGAATGGAGCTCCATCAATCTCGTTAACATTTCACTGTTTGGAAATCGACTAACAGGTCCAATTCCAAAAGAATTCGGAAAAATCACCACCTTGAAAAGCTTGGTTTTGGAGTTCAATCAATTATCCGGAAAGCTTCCTCCGGAGCTTGGGAATCTTCATCAGCTTGAAAGACTGCTTCTTACTTCCAACTATTTTACCGGGAATTTACCGGCAACATTTGCTAAGCTCACTAGACTGAAGCACCTTCGGCTTGGCGACAATCAATTATCTGGAAATATACCTGATTTCATTCAGAGTTGGACAAGTCTTGAGAGGCTGGTGATACAAGGGAGTGGTTTGAGTGGCCCAGTTCCATCTGCAATTTCATATCTGAAAAATCTCACCGACTTGAGAATAAGTGACTTGAAAGGATCAGATTCTCCTTTTCCGCAACTTATTAACTTGACGAATTTGGAAACATTAGTATTGAGGAGTTGCAATCTTATAGGAACAGTTCCCGAGTATCTTGGAAATGTTACCAATTTAAGATCATTAGACCTCAGTTTTAACAAATTAAGTGGAGAAATTCCGAACACCTTGGGTGGCTTGGAGAACATAAATATACTATATTTAACTGGAAACCTTTTTACTGGACCACTTCCAAATTGGATAGCTAGACCTGACTACACAGATCTTTCATATAACAATTTGACCATTGAAAATCCAGAGCAGTTGACATGTCAACAGGGAACCTTGAACTTGTTTGCATCGTCTTCAGAGGGGGGAAGTAACTTGGGAACGGTTTCATGTTTGGGGAACATTGGTTGTCCTAAAACTTGGTACTCTCTCCATATAAATTGCGGTGGTAAGCTCATAACTTCAAATGAAAGCTTGACATACGACGATGATTCAAATGAAGTTGGACCCGCAAGCTTTCACCGGACTGAATCAAACTGGGCACTCAGCAACACTGGTCACTTCTTTGATAGTGGCCTCTTGGACTACTATACCTGGTCTAATACAACTTTCCTTGCCATCGACAATGGAGAACTGTATATGGATGCACGCGTTTCTCCTCTTTCTCTAACTTATTATGGATTTTGCCTGGGAAATGGAAACTACACAGTAAAACTCCATTTTGCAGAGATAATGTTCACCGATGATCAAACATATAACAGCCTGGGAAGGCGTATATTTGACATCTATGTTCAGAGAAGGTTGGTGCTGAAGGATTTCGATATTGCAAAAGAAGCTGGTGGAGTTGGTAAGGCAATCATTAAGAATTTCACTGCTGTTGTGACTAGTAATACCTTGGAGATTCGCCTTCAGTGGGCTGGGAAAGGGACAACTGCTATTCCATTTGGATCGGTATATGGTCCTCTTATATCGGCTATATCAGTTGATCCTGACTTTACACCCCCAGTGGAAAAAGGAAGTGGCATACCTGTGTGGGATATTGTTGCAGTTGTAGTTGCTGGAGCACTAGTTATCTTCATGTTATTTGGTATAGCTAAGTGGAGAAGACGTCGACGACAAATAGGTCCTTTAGAAAGAGAGGTAAAGGGTTTAGATTTCCAACCTGGGTTATTTACGTTACGGCAAATCAAAGCTGCAACTAACAACTTTGATATAGCCTTCAAGATTGGAGAAGGAGGGTTTGGTCCAGTTTACAAGGGTGTTCTTTCGGACGGCACAATAGTAGCAGTTAAGAAGCTTTCTTCTAAATCAAAGCAAGGGAATCGTGAATTTATAAATGAGATTGGCTTAATTTCTGCTTTGCAACACCCTTGTCTAGTTAAGCTCTATGGTTGTTGTATGGAGGGAGATCAGTTATTGCTGATATATGAATACATGGAAAATAATAGCCTTGCTTGTGCTTTGTTTGCCAAAGCAAAAGATCAATTGAAATTGGCTTGGTCGACAAGGAAGAGAATTTGCGTTGGCATTGCTAGAGGTCTGGCTTACCTTCATGAAGAGTCGAGGCTAAAGATAGTTCACAGAGACATCAAGGCTACTAATGTGTTACTGGATAAAGATCTCAATCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTAAAGACGAGGGACACACTCACATGACCACTAGAGTAGCTGGCACTTATGGATATATGGCTCCAGAATATGCAATGCACGGATATTTGACCGAGAAAGCAGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATTGTTAGTGGGAAGCACAACACCATGAGTAGGCCTAAGGATGAATGCTTCTGTATTGTTGATTGGGTGCATCTCTTGAAGGAAGAAGGTAACATAATGGACCTAGTTGATGAGAGGTTAGGTGAAGATTTCGAAAAAGAGGAAGTAATGGTCATGATCAATGTGGCTCTTTTATGCACTCATGTTTCTCCAATGCACAGGCCAACCATGTCATCAGTGGTAAGCATGCTTGAAGGAAATTCTGTTGTGGAAGAAGTGGTGTCAGACACAAGCCAAGTTTTTGAAGGGAAAAAGTTGGAGATGATTCAACAGTATTACCAACAAAACGAAAATAATGTTACCCCTGAAGAAGAGAGCATCTTAATAGATGCAACTGCTGAATATATGTCTGATACAAATCTACATTCTATCAACATGGATTCTCCTTATAGAAGTTTCAACACTCTGTAA 2880 0.4031 MISIAKSIYAQRPPPRNNLHCHLSNNARLTTREVFDTQITVTLCVLKSQNLSGTLPRECVKLPYLQQIDLTRNYLNGTIPPEWSSINLVNISLFGNRLTGPIPKEFGKITTLKSLVLEFNQLSGKLPPELGNLHQLERLLLTSNYFTGNLPATFAKLTRLKHLRLGDNQLSGNIPDFIQSWTSLERLVIQGSGLSGPVPSAISYLKNLTDLRISDLKGSDSPFPQLINLTNLETLVLRSCNLIGTVPEYLGNVTNLRSLDLSFNKLSGEIPNTLGGLENINILYLTGNLFTGPLPNWIARPDYTDLSYNNLTIENPEQLTCQQGTLNLFASSSEGGSNLGTVSCLGNIGCPKTWYSLHINCGGKLITSNESLTYDDDSNEVGPASFHRTESNWALSNTGHFFDSGLLDYYTWSNTTFLAIDNGELYMDARVSPLSLTYYGFCLGNGNYTVKLHFAEIMFTDDQTYNSLGRRIFDIYVQRRLVLKDFDIAKEAGGVGKAIIKNFTAVVTSNTLEIRLQWAGKGTTAIPFGSVYGPLISAISVDPDFTPPVEKGSGIPVWDIVAVVVAGALVIFMLFGIAKWRRRRRQIGPLEREVKGLDFQPGLFTLRQIKAATNNFDIAFKIGEGGFGPVYKGVLSDGTIVAVKKLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLACALFAKAKDQLKLAWSTRKRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLKDEGHTHMTTRVAGTYGYMAPEYAMHGYLTEKADVYSFGVVALEIVSGKHNTMSRPKDECFCIVDWVHLLKEEGNIMDLVDERLGEDFEKEEVMVMINVALLCTHVSPMHRPTMSSVVSMLEGNSVVEEVVSDTSQVFEGKKLEMIQQYYQQNENNVTPEEESILIDATAEYMSDTNLHSINMDSPYRSFNTL* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5378 959 Pfam Leucine rich repeat 230 289 IPR001611 GO:0005515
Psa5g5378 959 ProSiteProfiles Protein kinase domain profile. 616 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5378 959 SUPERFAMILY L domain-like 80 321 - -
Psa5g5378 959 SMART serkin_6 616 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5378 959 Pfam Malectin domain 356 539 IPR021720 -
Psa5g5378 959 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 34 243 - -
Psa5g5378 959 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 334 921 - -
Psa5g5378 959 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 242 300 - -
Psa5g5378 959 Gene3D Phosphorylase Kinase; domain 1 583 691 - -
Psa5g5378 959 Gene3D - 354 543 - -
Psa5g5378 959 Gene3D Transferase(Phosphotransferase) domain 1 692 904 - -
Psa5g5378 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Psa5g5378 959 ProSiteProfiles Leucine-rich repeat profile. 255 278 IPR001611 GO:0005515
Psa5g5378 959 SUPERFAMILY Protein kinase-like (PK-like) 598 895 IPR011009 -
Psa5g5378 959 CDD STKc_IRAK 622 889 - -
Psa5g5378 959 Gene3D Ribonuclease Inhibitor 17 143 IPR032675 -
Psa5g5378 959 Pfam Protein kinase domain 621 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5378 959 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 242 300 - -
Psa5g5378 959 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 334 921 - -
Psa5g5378 959 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 243 - -
Psa5g5378 959 Gene3D Ribonuclease Inhibitor 144 348 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5378 Psa-Chr5 468429409 468437297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5378 46 935 Receptor kinase-like Gene Family AT1G53420 54.961 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa5g5378 Pkinase 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5378 - - gmx:100786496 1442.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5378 5 468429409 468437297 Psa5g5378 5 468429409 468437297 ECH