Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5337 ATGAAGAATTGCACCATTAATGATGCATTAGAGTTAGTCACAGCAGTAAAAGTTGAGTTTCATGATAAGAATAGAGAAAAGTACCATTCTTTTTTAGAAATTTTGAAAGATTACAAAGCTCAAAGAATTGATACAAGGGTTGTTAGATTAAAAGTGTATCAATTGTTTGAAGGCCATAAAGATTTAATTTTGAGATTCAACACCTTTGTGTCAACGCAATATGAAATCAAACTTCCGTTAGATTGTGACGATAGACAACAACAATGTGGTCGATTAGAGGTAGGACTAGAAGATGCATTAGCTTTTTTGAAGAGAGTAAAAGATGTGTTTCAAGGTAAGAGTAAGGAAAAGTATGATGAGTTTATAGAAATGATGAATGATTTCAAGGCTCAGAGAATCGATACAAGTGTTGTTGTGGATAGAGTGAAGGAGCTGTTTAAAGGGCATACGACTTTGATTTTGGGATTTTATGACTTCTTGCCAAAGGAATATCGAGACGATGAGCTTCGATTAGAGGAAAAAGATGCATTAGCTTTTCTCAAGAGAGTAGGAGATGTGTTTCAAGGTAAGAATAGGGAAGAGTATAATGAGTTTTTAGAAATTTTGAAGGATTTCAAGGCTCAGAGAATCGATACAAGTGTTGTTGTGGATAGAGTGAAGGAGCTGTTTAAAGGGCATACAAATTTAATTTTGGAATTCAGTGCCTTCTTGCCAAAGAATTATCGAATCAGACTTCCACTTCAGCTTCAGACTGGGAACAAAGTGAAGAAGGTAGCAGAGAACTGTGAAATTCCTTGGGACCTGCTCGATATCATCTCCTGGAAACTAGATTTTGACGACCTCTTCGGATTCGCTGGTGTGTGCAAGAGTTGGAGGGAATTTCATAAAATTTATTGGAGAAATTTCATGGCATCCCAAGAACCATTACTTCTTCAAAAGTCTTGCCATGATAAAAAATCTTTTTCCTTCATCAGCATACATGATCAAAGAGTTTATCACTCAAAGACAATCAATCATTTCTGGAACTTGGCCTATTCTGGGTCTTCTAGCGGATATTTGATCATGACAACCGAGAATAATTCATTTATACTGATGAATCCATTTACAAGAAAAAAGATGGAAATCAATACAACAGCTTTTAAAGTCGAGTTTTCTGTTTTTGCTTACCATGTCTTACTTGCTTTCGGCAAAGGCTCGGAGGAATTTGTCTTCGTGGCTTTATGTACAAGTTCTAACAGTTTACATGTCTATCAATCTCGAAACTCCGATTGGATTACTTACTCGACTAAGGGAAAACCATGGAAGGTTGTTGACTTTGTTGTTTTGCATAATACTATATATGTTGTAACCGACAAGGCAAAGATAGGTGTACTCGGCTTGAATTCTGCAAATATAAAGTTTTTAGAATTGAAGAGTACTCCCAAGGTAACTTCTTCCTCACACCTAAGATTGGTTAGTTGTGACGTCCGTCTTCTAATGATTCATATTTTGTCTCGGAGAATATTGAATGTGTACGAGATAGACTTGTCAATCAAGAATTTTGTCGAGATGAAAACTCTAGGCGACATTGCATTATTTTATGCTTCTGGGAAATACTTCTACGCGATGAGCAACCCGGGAAGATGGGGCTATGAGAGCAATTCTTTGCATGTCATCAATCTTTCATCTACACAATGCATAGTGTCTATAGGGAATGATAACAATTTGCCAGAATACATTAGCCATGATAGACTAAGTAATCCTCCTAAAGGAAGACCCTACTTGTTGGATTGGTGTTTTAAACATCTACACTATGAAGTGGATTATTCTCTTGATGATTAA 1821 0.363 MKNCTINDALELVTAVKVEFHDKNREKYHSFLEILKDYKAQRIDTRVVRLKVYQLFEGHKDLILRFNTFVSTQYEIKLPLDCDDRQQQCGRLEVGLEDALAFLKRVKDVFQGKSKEKYDEFIEMMNDFKAQRIDTSVVVDRVKELFKGHTTLILGFYDFLPKEYRDDELRLEEKDALAFLKRVGDVFQGKNREEYNEFLEILKDFKAQRIDTSVVVDRVKELFKGHTNLILEFSAFLPKNYRIRLPLQLQTGNKVKKVAENCEIPWDLLDIISWKLDFDDLFGFAGVCKSWREFHKIYWRNFMASQEPLLLQKSCHDKKSFSFISIHDQRVYHSKTINHFWNLAYSGSSSGYLIMTTENNSFILMNPFTRKKMEINTTAFKVEFSVFAYHVLLAFGKGSEEFVFVALCTSSNSLHVYQSRNSDWITYSTKGKPWKVVDFVVLHNTIYVVTDKAKIGVLGLNSANIKFLELKSTPKVTSSSHLRLVSCDVRLLMIHILSRRILNVYEIDLSIKNFVEMKTLGDIALFYASGKYFYAMSNPGRWGYESNSLHVINLSSTQCIVSIGNDNNLPEYISHDRLSNPPKGRPYLLDWCFKHLHYEVDYSLDD* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5337 606 SUPERFAMILY PAH2 domain 3 74 IPR036600 GO:0006355
Psa5g5337 606 SUPERFAMILY PAH2 domain 93 164 IPR036600 GO:0006355
Psa5g5337 606 ProSiteProfiles PAH domain profile. 167 240 IPR003822 GO:0006355
Psa5g5337 606 PANTHER OS06G0113600 PROTEIN 257 601 - -
Psa5g5337 606 SUPERFAMILY PAH2 domain 171 239 IPR036600 GO:0006355
Psa5g5337 606 Gene3D Paired amphipathic helix 98 161 IPR036600 GO:0006355
Psa5g5337 606 Gene3D Paired amphipathic helix 8 70 IPR036600 GO:0006355
Psa5g5337 606 Gene3D Paired amphipathic helix 175 238 IPR036600 GO:0006355
Psa5g5337 606 PANTHER OS06G0113600 PROTEIN 257 601 - -
Psa5g5337 606 ProSiteProfiles PAH domain profile. 92 163 IPR003822 GO:0006355
Psa5g5337 606 Pfam Paired amphipathic helix repeat 116 160 IPR003822 GO:0006355
Psa5g5337 606 Pfam Paired amphipathic helix repeat 193 237 IPR003822 GO:0006355
Psa5g5337 606 Pfam Paired amphipathic helix repeat 26 70 IPR003822 GO:0006355
Psa5g5337 606 ProSiteProfiles PAH domain profile. 2 73 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5337 Psa-Chr5 464942403 464945392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5337 1 81 WRKY Transcription Factor Family AT4G12020 47.561 6.20e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa5g5337 PAH 4.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5337 - K11644 cam:101488742 752.666