Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5331 ATGGATGAATATTATTGTACCGCACATCCTTCAATCGATTGTGATGCATTATGCGACAATGACCCGTATCTTAATATAGAATTCAATTACACCATTATCAGTGTTCCAAGTGATAAAATGTTGCCATCTTTGAGTGAAACTAAAAGTTACGTTCTTTGTTATGAGTCAAAAGATAAAGAAATCCAAAAAGCTATCATTCTAGCATGGCTTTCTGAAATAGATGTTCCTGAAGATGCTTTTACTATGGTGCTACAAGAAATTTCACAATGTGTACATGAGATGGTTGATGGGATATATAAGAACTCGAAAGATCTTTCTATTCGAGTTGATTTTTCTGTTACACGGAATATTAAAGAGGGTGATGAAGATGAAGATGATGTGGAAATGGAGGTAGAAGAAAATGAAGATAATGAATCAAGAAGGTCTACTGAAGATTATCGTCGTGGAAATGATTATGGAGATTCATGGAGTTCGTATAGGGAAGAGGATATGGGAATTGAAGATGGTGAAGATGAATGGGAGTATGGTTGGGAAGAGGGAATAGAGATGGAACAAGATATTAGGTTTGTTCCTGCGGCTAAATCTTGTATTGAGGGATTGAAGATGGTAACGGTTGAAGAAGCGGAAAAATGTAGTATTTGTTTCGATGATTTCAAGGTTGGTGTCTGTCTGTCATGTTCGCATATGTTTCATAAGGATTGTATTCAAGATTGGTTGAATATAGGCAATTCTTGTCCCTTGTGTAGGTTTCAATTGCCTACTAATAGTAATAACACAAGTGAATAA 786 0.3562 MDEYYCTAHPSIDCDALCDNDPYLNIEFNYTIISVPSDKMLPSLSETKSYVLCYESKDKEIQKAIILAWLSEIDVPEDAFTMVLQEISQCVHEMVDGIYKNSKDLSIRVDFSVTRNIKEGDEDEDDVEMEVEENEDNESRRSTEDYRRGNDYGDSWSSYREEDMGIEDGEDEWEYGWEEGIEMEQDIRFVPAAKSCIEGLKMVTVEEAEKCSICFDDFKVGVCLSCSHMFHKDCIQDWLNIGNSCPLCRFQLPTNSNNTSE* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5331 261 Pfam Ring finger domain 210 249 IPR001841 -
Psa5g5331 261 SUPERFAMILY RING/U-box 210 255 - -
Psa5g5331 261 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CIP8-LIKE ISOFORM X1 104 258 - -
Psa5g5331 261 MobiDBLite consensus disorder prediction 119 147 - -
Psa5g5331 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 260 IPR013083 -
Psa5g5331 261 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 104 258 - -
Psa5g5331 261 ProSiteProfiles Zinc finger RING-type profile. 211 249 IPR001841 -
Psa5g5331 261 SMART ring_2 211 248 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5331 Psa-Chr5 464684240 464685356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5331 191 255 C3H Transcription Factor Family AT3G02340 45.946 1.63e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5331 - K11982 cam:101499491 168.318