Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5328 ATGAGTAGTACTTCAAAGCAAAACTGGGGTGATGGTTGCAAAAGGGCAATGCGTAGCCGGTCATTATTGCCAGAGGAAGAAGCTGATCAAAGAGGTAACACGGGAGGAGGAGAAGATACTTTAAAGAAAGATAGCGAAGCGGATCAAAGAGTTAACGTGGATGGAGGAGAAGTTACTCTAAAGAAAGGTCCGTGGACAAAGAAAGAGGATGAAATTTTGATAGATCATATTAAAAAGCATGGAGAGGGAAACTGGAATGTGGTCCAAAAGGAGTCCGGACTTGCTCGCTGTGGGAAAAGCTGCCGTCTCCGATGGTTTAATCACTTGAGGCCAGGACTGAAAAAGGGTTCGTTTACTGCTGAAGAAGAACGCTTAATCTTTGAGTACCACTTTCTGAAGGGAAGCAAGTGGGCTCATATGGCTGCATTGGTAATTGTTGAATAA 444 0.4392 MSSTSKQNWGDGCKRAMRSRSLLPEEEADQRGNTGGGEDTLKKDSEADQRVNVDGGEVTLKKGPWTKKEDEILIDHIKKHGEGNWNVVQKESGLARCGKSCRLRWFNHLRPGLKKGSFTAEEERLIFEYHFLKGSKWAHMAALVIVE* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5328 147 CDD SANT 64 109 IPR001005 -
Psa5g5328 147 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 44 142 - -
Psa5g5328 147 MobiDBLite consensus disorder prediction 18 51 - -
Psa5g5328 147 Gene3D - 61 114 - -
Psa5g5328 147 SMART sant 61 111 IPR001005 -
Psa5g5328 147 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 44 142 - -
Psa5g5328 147 ProSiteProfiles Myb-like domain profile. 57 109 IPR001005 -
Psa5g5328 147 MobiDBLite consensus disorder prediction 1 54 - -
Psa5g5328 147 SUPERFAMILY Homeodomain-like 63 139 IPR009057 -
Psa5g5328 147 Pfam Myb-like DNA-binding domain 62 109 IPR001005 -
Psa5g5328 147 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 113 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5328 Psa-Chr5 464557226 464557755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5328 54 142 MYB Transcription Factor Family AT5G55020 70.787 2.82e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g5328 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5328 K09422 - jre:109012280 149.058