Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5325 ATGACAAGTATTCCAAATCAAAATCAAAATCAAAATCAAAATCAAATTCAAATTCAGTGTAAGACTGAACCCAAAACCCTAAACACAAACCCTTATCCTCCCCCAACTGCTCTCTACTCAGACCTTGTTCGTGACGCTAATCTCTTCAAGGAAAAGCTTCAATCTTTTCATGATTCATTTGGTACCAAATTAAAGATTCCTACTATAGGAGGGAAACCACTAGATCTTCATCACCTTTTTATTGAAGTAACATCTCGCGGTGGTGTGGAAAAGGTAATTGTAGATCGTAAATGGAAGGAAGTAATTATGACCTTCAACTTCCGCGATACCATAACAAGCGCATCATTCATGGTGCGCAGGTACTATCTATCATTGCTTTATCACTTTGAGCAAGCGTATTATTTAGGGAAGCAAGCCCCTCCTTCACCACCTAGTGCTCTGAGTGGGAACCTTGCCAATAGCTCCTCAATCAACAAGGAGGGTGCTGCTATTAATGATTCACCTCGTCAGGTTAGTCCAGCACAGACAATTGGTACTTCATTGCATGGGACAATCGACGAGAAATTTGACGGTGGATATATAGTTACGGTGGACCTAGGTTCTCAACAGCTGAAAGGTGTCCTGTATCATGTTTCAAGTAATGTATCTCAGAGTTCATATGCTAAAGGTTTATCAGGAGAAAGGGTTGAGAGATGA 696 0.4066 MTSIPNQNQNQNQNQIQIQCKTEPKTLNTNPYPPPTALYSDLVRDANLFKEKLQSFHDSFGTKLKIPTIGGKPLDLHHLFIEVTSRGGVEKVIVDRKWKEVIMTFNFRDTITSASFMVRRYYLSLLYHFEQAYYLGKQAPPSPPSALSGNLANSSSINKEGAAINDSPRQVSPAQTIGTSLHGTIDEKFDGGYIVTVDLGSQQLKGVLYHVSSNVSQSSYAKGLSGERVER* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5325 231 ProSiteProfiles ARID domain profile. 43 134 IPR001606 GO:0003677
Psa5g5325 231 SUPERFAMILY ARID-like 43 141 IPR036431 GO:0003677
Psa5g5325 231 SMART ARID_2 40 130 - -
Psa5g5325 231 Pfam ARID/BRIGHT DNA binding domain 48 130 IPR001606 GO:0003677
Psa5g5325 231 CDD ARID_HMGB9-like 45 130 IPR045303 GO:0003677
Psa5g5325 231 Gene3D - 39 150 IPR036431 GO:0003677
Psa5g5325 231 SMART bright_3 44 135 IPR001606 GO:0003677
Psa5g5325 231 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 221 - -
Psa5g5325 231 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 15 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5325 Psa-Chr5 464434014 464437821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5325 37 218 ARID Transcription Factor Family AT3G13350 51.596 9.01e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Psa5g5325 ARID 5.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5325 - - mtr:MTR_3g009890 326.635