Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5320 ATGTCGATGTTACTAAGGAAACTGTTGGAAATCATGTTGAGACGAAATCCAACATGTTCCGATGAAGAAAACCAAGTCTTGGAGCGTGGTGATTTGGGTGAATTGGATCAACTACCTAGTGATATCTTGGTACAAATTTTGAGACTTTTGGGTCCCAAAGAGGTTGCGAAACTGAGTGTGATTTGCAGGTCTTTGAGATTTTTTGTATCTGATAATCGCTTATGGCTTCACTTCCTTCAGACTCATCAATCTGATCCTTCTTGGGATTCTGTTTTCTTTGCTGAAACTAATTTGACTTCTGGTTACCCTATTCCATCCTTTGTTGGTCAGAGGCCACAGTTGTCATTCAAACATATCTATGGCCAAAGGGCACAAGTTCCCGGTGCTATTATCATTGATGGCGGTTCTGGCTACTGCAAATTTGGTTGGAGCAAATACGCTTGTCCGTCAGGACGATCCGCAACATTTTTGGAATTCGGCAACATTGAGTCGCCAATGTATACTAGACTTCGACATTTTTTCGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAATCAACCGGTTATTGTTTCTATACCGATATGCCATTATGAAGATACTGAATCAGCCAGAGCATCGAGACGGCAACTTAAAGAAGCGATTTATGCTTCCCTTTTCGACTTGAATGTTCCTTCTGTTTGTGCTGTCAACCAGGCGACTCTAGCTTTATATGCTGCGAAACGAACTTCTGGAATAGTGGTTAATATAGGTTTTCAAGTCACATCGGTAGTTCCAATTTTTAATGGTAAAGTAATGCGCAAGATCGGTGTGGAAGTTTTGGGATTCGGAGCGCTGAAAGTTACGGGATTTCTTAAGGAAAAGATGCAACTGAATAATCTAAATTTTCAATCTTTATACACCGTTCGCGCTTTGAAAGAGAATCTATGCTACGTTGCTCTTGATTACGAAGCGGAGCTATTGAAGAAAAACACACAAGCATCGTTTCAAGCTGCGGGAGATGGATTGTTTACACTTTCGAAAGAACGGTTTCAGACGGCAGAGGTTTTATTCAAGCCGCATCTTGCTGGAATGCAAGAAATGGGTTTGCACCATGCTATAGCTCTCTGTATGGAGCATTGCCATTGTGCAGATTTACCGGGCGAAAGTGATTGGTACAAAACTGTCGTTTTATCGGGAGGAACCGCATGTTTGCCAGGTTTGGCAGAAAGATTAGAAAAGGAGCTTCATAGCTTACTTCCGCCATTCGTGTCGAATGGAATTCGAGTCACACCTCCTCCATACGGCGTCGATACTCCATGGTTTGGAGCGAAAATGATTGGCAATTTGAGCACATTTCCCGGTCCTTGGTGTGTGGAAAAATCGAAGTTTCGCCAGAAGCCTAGACTCAGTCTCATATGGTGA 1407 0.4243 MSMLLRKLLEIMLRRNPTCSDEENQVLERGDLGELDQLPSDILVQILRLLGPKEVAKLSVICRSLRFFVSDNRLWLHFLQTHQSDPSWDSVFFAETNLTSGYPIPSFVGQRPQLSFKHIYGQRAQVPGAIIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNNQPVIVSIPICHYEDTESARASRRQLKEAIYASLFDLNVPSVCAVNQATLALYAAKRTSGIVVNIGFQVTSVVPIFNGKVMRKIGVEVLGFGALKVTGFLKEKMQLNNLNFQSLYTVRALKENLCYVALDYEAELLKKNTQASFQAAGDGLFTLSKERFQTAEVLFKPHLAGMQEMGLHHAIALCMEHCHCADLPGESDWYKTVVLSGGTACLPGLAERLEKELHSLLPPFVSNGIRVTPPPYGVDTPWFGAKMIGNLSTFPGPWCVEKSKFRQKPRLSLIW* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5320 468 SUPERFAMILY Actin-like ATPase domain 243 452 IPR043129 -
Psa5g5320 468 SMART actin_3 127 458 IPR004000 -
Psa5g5320 468 CDD NBD_sugar-kinase_HSP70_actin 130 275 - -
Psa5g5320 468 SUPERFAMILY Actin-like ATPase domain 128 249 IPR043129 -
Psa5g5320 468 ProSiteProfiles F-box domain profile. 32 78 IPR001810 GO:0005515
Psa5g5320 468 PANTHER MACRONUCLEAR ACTIN 82 465 - -
Psa5g5320 468 Gene3D - 234 433 - -
Psa5g5320 468 Gene3D - 175 458 - -
Psa5g5320 468 Gene3D Actin; Chain A, domain 4 277 361 - -
Psa5g5320 468 SUPERFAMILY F-box domain 25 91 IPR036047 GO:0005515
Psa5g5320 468 PANTHER ACTIN 82 465 IPR004000 -
Psa5g5320 468 Pfam F-box domain 35 76 IPR001810 GO:0005515
Psa5g5320 468 Pfam Actin 176 452 IPR004000 -
Psa5g5320 468 Gene3D - 23 102 - -
Psa5g5320 468 SMART fbox_2 38 78 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5320 Psa-Chr5 464333812 464338432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5320 176 464 Cytoskeleton Gene Families AT3G12110 32.095 5.22e-42 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5320 K16616 - gmx:100791973 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5320 5 464333812 464338432 Psa5g5320 5 464333812 464338432 ECH