Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5307 ATGGAAGATCAAGCAGAAGAAGAGGGAGAACAAAGAGTCAACGGAGACACAATTGTTGCTGGTGTTGGTGGTACTCCGTCTGAAGATGGATATAATTGGAAAAACTACGGTCGAACGCGAATTAAGAGTAGCGAGTTCCCACGAAGATACTTCAAATGCACCCATTCAAATTGTCCGGCTAAAAAGAAGGTAGTATATTCTCACGAGGGCCACATGACAGAGATCATCTATATGGTAGCACACAACCACCCGAAACCTCCTCCAAGTCGCTGGTCAGGCATAGGGTCAGCTAATCCTCATGCTGACATGCAAGTGGACAATCCCGAACATGTTGAAGCGACGTCAGCTGCATCTGCTATTGCTGATGAGTACGGCAACCAGTCCATCAATCTGCAAACTCAAAATGGTATTACTCACTTAGACTCAGGTGATGCTGTGGATGGCTCATCCACTTTTTCTAACGAAGAAGAGCAGGACGGTCAAGGCACTCATGGTAGTGTATCATTAGGTTATGATGCAGAAGGAGATGAATCCAAGTCTAAAAGAAGGAAACTGGAATCCTTTGCTGAGATGATTGGATCTACTAGAGCCATTTGCGAGCCTAGAGTTGTTGTGCAGACTACCAGCAAAGTAGATATCCTCGATGATGGTTATCGATGGCAAAAATATGGGGATAAAGTTGTCAAAGGAAATCTATACCCAAGGAGTTACTACAGGTGCACCAATGCTGGGTGCACTGTAAGGAAGCATGTGGAGAGAGCATCGCATGACCTTAAATCTGTGATCACCTCATACAATGGAAAGCACAATCACGATGTACCCGCTGCTCGTTCTAGCCGTCACGTCAATGCGAACAACACATCTAATGCAGGTCAAGGGCAAGCTTCTGGTCTTCTTCAAAACCATGCTCATAGAACTGAACCATCTCAAATTCACAATGGAATGGGAAGGCCTTCACTCGGCTCATTCAACTTTCATGGCAGACAGCAGCTAGCTAATCCGCACGGCTTCTCCTTCGGCATGAATCAACACCTCTCCAACCTTGCAATGTCTGGTTTAGGTCCCTCTTCACTGATGCATATGAATCCATTCATGGCGCAACAACAACAGCGTGTCGCAAATGAAATGGGCATCATGTTACCAAATGGAGATCTTATGAATCACATGCCTTTCGGACCTCACATGTAA 1188 0.4554 MEDQAEEEGEQRVNGDTIVAGVGGTPSEDGYNWKNYGRTRIKSSEFPRRYFKCTHSNCPAKKKVVYSHEGHMTEIIYMVAHNHPKPPPSRWSGIGSANPHADMQVDNPEHVEATSAASAIADEYGNQSINLQTQNGITHLDSGDAVDGSSTFSNEEEQDGQGTHGSVSLGYDAEGDESKSKRRKLESFAEMIGSTRAICEPRVVVQTTSKVDILDDGYRWQKYGDKVVKGNLYPRSYYRCTNAGCTVRKHVERASHDLKSVITSYNGKHNHDVPAARSSRHVNANNTSNAGQGQASGLLQNHAHRTEPSQIHNGMGRPSLGSFNFHGRQQLANPHGFSFGMNQHLSNLAMSGLGPSSLMHMNPFMAQQQQRVANEMGIMLPNGDLMNHMPFGPHM* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5307 395 MobiDBLite consensus disorder prediction 148 165 - -
Psa5g5307 395 ProSiteProfiles WRKY domain profile. 28 86 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g5307 395 PANTHER WRKY TRANSCRIPTION FACTOR 2-RELATED 15 348 - -
Psa5g5307 395 ProSiteProfiles WRKY domain profile. 209 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g5307 395 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 348 IPR044810 GO:0003700
Psa5g5307 395 SUPERFAMILY WRKY DNA-binding domain 206 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g5307 395 MobiDBLite consensus disorder prediction 1 26 - -
Psa5g5307 395 Pfam WRKY DNA -binding domain 215 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g5307 395 Pfam WRKY DNA -binding domain 28 84 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g5307 395 Gene3D WRKY domain 20 87 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g5307 395 Gene3D WRKY domain 199 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g5307 395 SUPERFAMILY WRKY DNA-binding domain 25 86 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g5307 395 SMART WRKY_cls 27 85 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g5307 395 SMART WRKY_cls 214 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g5307 395 MobiDBLite consensus disorder prediction 148 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5307 Psa-Chr5 463770890 463773281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5307 26 380 WRKY Transcription Factor Family AT4G26440 49.864 2.51e-105 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa5g5307 WRKY 1.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5307 K18835 - gmx:100796545 527.324