LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g5306	ATGGCTGGGATTGATGAAAATGTTGGACTTAATGGTGATTGGGGTCTTCCGAATCCGAGTCCGAGAACCCTATTTTCTCGAATGCTTGATGAAGAGAGTAATAGTGTAACAAGACAAATCTCTGAACAATCTGAAAGTGATAGAATTGAGGTACAAGACGGTGATTCGGGTACCCAATTGAGCGATGCTAGTTATCGAACCGATCATAAGTTGAACTCGCGAGGGGGTCTTGTTGAAAGAATTGCTGCTAGAACCGGATTTAATGCTCCGAGGCTGAATACAGAAAGCATTAGATCTACAGAGCTTTCACTCAATTCTGAGATTCAGTCTCCGTATTTGACTATACCGCCTGGTCTTAGTCCTACTACACTTTTAGATTCTCCCGTTTTCCTTGCGAATTCGTTGGCACAACCATCTCCAACAACAGGAAAGTTTCCATTTGTCTCAAACGGAAACATGCGCAGCACAGAATTATCTTCTGATGATCAACAAAAATCTAAACTTAATGGCTTCAATGATATGTATGCAGCATCCTTTGCTTTCAAGCCTACACCCGATTCAGGACCCTCTTTTTATCACGGTGCTGGTAGAAATATAAATCAAACTACACTTCCTCAGCAAACCCTTCATGGTTTTGAAGCTTCGGTTCAATCTCAAAGAGTTGATGCGACTGAGAACAAAAGTAGCCTCCATCTTAAGGCAGAATTCTCCGACTCGCCACCTCAAAAAGACAATTCGGCACCAATGGAAGATCAAGCAGAAGAAGAGGGAGAACAAAGAGTCAACGGAGACACAATTGTTGCTGGTGTTGGTGGTACTCCGTCGGAAGATGGATATAATTGGAGAAAATACGGTCAAAAGCAAGTTAAGGGTAGCGAGTTCCCGCGAAGCTACTACAAATGCACCCATTCAAATTGTCCGGTTAAAAAGAAAGTAGAACGTTCTCACGAGGGCCACATAACAGAGATCATCTATAAGGGAGCACACAACCACCCGAAACCTCCTCCAAGTCGTCGGTCAGGCGTTGGGTCAGCTAACCCTCATGCCGATATGCAAGTGGACAATCCCGAACATGTTGAAGCACAGGGAAATATAGCTAATTGGAAGCTGGAAAACCTTGAAGCGACGTCAGCTGCATCTGCTATTGCTGAGTACGGCAACCAGTCCAACAATCCGCAAACTCAAAATGGTATTACTCACTTAGACTCAGGTGATGCCGTGGATGGCTCATCCACTTTTTCTAACGAAGAAGAGGAAGACGATCAAGGCACTCATGGTAGTGTATCATTAGGTTATGATGCGGAAGGAGATGAGTCCGAGTCTAAAAGAAGGAAACTGGAATCCTATGCTGAGATGAGTGGAGCTACTAGAGCCATTCGCGAGCCTAGAGTTGTTGTGCAGACTACCAGCGAAGTAGATATCCTTGATGATGGTTATCGATGGCGAAAATATGGGCAAAAGGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCTGGGTGCACTGTAAGGAAGCATGTGGAGAGAGCATCACATGACCTTAAATCTGTGATCACCACATATGAGGGAAAGCACAATCACGATGTCCCCGCTGCTCGTTCCAGCAGTCACGTCAACGCGAACAACGCTTCTAACGCAGGTCAAGGACAAGCTTCTGGTCTTCTTCAAAACCATGCTCATAGAACTGAACCATCTCAAATTCACAACGGAATGGGAAGGCCTTCACTCGGCTCATTCAACTTTCATGGCAGACAGCAGCTAGCTCATCCGCACGGCTTCTCCTTCGGCATGAATCAACACCTCTCCAACCTTGCAATGTCTGGTTTAGGCCCCTCTTCACGAATGCCTATGAATCCATTCATAGCGCATCAACAACAACAGCATCATCAACAACAACAACAACGTGCCGCAAATGAAATGGGCTTCATGCTACCAAAGGGAGAACCAAATATGGACGCAAATTCTGAACGCGGAAGCCTTAACATGCAAAACGGTTCATCATCAATGTATCAAGATATTATGAATCACATGCCTCTCGGACCTCACATGTAA	2067	0.4504	MAGIDENVGLNGDWGLPNPSPRTLFSRMLDEESNSVTRQISEQSESDRIEVQDGDSGTQLSDASYRTDHKLNSRGGLVERIAARTGFNAPRLNTESIRSTELSLNSEIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFPFVSNGNMRSTELSSDDQQKSKLNGFNDMYAASFAFKPTPDSGPSFYHGAGRNINQTTLPQQTLHGFEASVQSQRVDATENKSSLHLKAEFSDSPPQKDNSAPMEDQAEEEGEQRVNGDTIVAGVGGTPSEDGYNWRKYGQKQVKGSEFPRSYYKCTHSNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPSRRSGVGSANPHADMQVDNPEHVEAQGNIANWKLENLEATSAASAIAEYGNQSNNPQTQNGITHLDSGDAVDGSSTFSNEEEEDDQGTHGSVSLGYDAEGDESESKRRKLESYAEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANNASNAGQGQASGLLQNHAHRTEPSQIHNGMGRPSLGSFNFHGRQQLAHPHGFSFGMNQHLSNLAMSGLGPSSRMPMNPFIAHQQQQHHQQQQQRAANEMGFMLPKGEPNMDANSERGSLNMQNGSSSMYQDIMNHMPLGPHM*	689

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g5306	688	MobiDBLite	consensus disorder prediction	220	282	-	-
	Psa5g5306	688	MobiDBLite	consensus disorder prediction	325	346	-	-
	Psa5g5306	688	Gene3D	WRKY domain	268	335	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g5306	688	SUPERFAMILY	WRKY DNA-binding domain	467	535	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g5306	688	MobiDBLite	consensus disorder prediction	408	452	-	-
	Psa5g5306	688	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	88	609	IPR044810	GO:0003700
	Psa5g5306	688	MobiDBLite	consensus disorder prediction	435	450	-	-
	Psa5g5306	688	ProSiteProfiles	WRKY domain profile.	276	334	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g5306	688	MobiDBLite	consensus disorder prediction	38	64	-	-
	Psa5g5306	688	SUPERFAMILY	WRKY DNA-binding domain	273	334	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g5306	688	Gene3D	WRKY domain	462	528	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g5306	688	Pfam	WRKY DNA -binding domain	276	332	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g5306	688	Pfam	WRKY DNA -binding domain	476	532	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g5306	688	PANTHER	WRKY TRANSCRIPTION FACTOR 2-RELATED	88	609	-	-
	Psa5g5306	688	SMART	WRKY_cls	275	333	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g5306	688	SMART	WRKY_cls	475	534	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g5306	688	ProSiteProfiles	WRKY domain profile.	470	535	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g5306	Psa-Chr5	463751659	463755833	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g5306	1	683	WRKY Transcription Factor Family	AT5G56270	48.295	5.80e-176	516

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Psa5g5306		WRKY	3.4e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g5306	K18835		-	gmx:100127395	972.615

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa5g5306	5	463751659	463755833	Psa5g5306	5	463751659	463755833	ECH