Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5305 ATGTCATGTAGATTTTCACCATCAACACCAACAACAACATCAAAAACAACATGTGTTATTGTTCTTCTTCATGTGTTTGTTTCATTCACCACACTAACCTTAACATCATCAACAACATCAACAACAACGTTTGATTCAACAACGTTGTTAAACAATTTCAAACACTCCAACATCATTTCTGACCCAAAAAACTTCCTATCAAATTGGTCACTTTCATCTTCCCCTTGTTACTGGCAAGGTATCATTTGTTCTAACTCCGGCGAAATCACCACCGTTAACCTCACCGGAGCTTCACTTTCCGGCAACACTCTCAACCTTTTGACCTTCACTTCAATACCTTCTTTACAACACCTTCTCTTACATGGAAACTTTTTCAGCTCTTTTAACTTCACTGTTTCAAATTCAAAGCCTTGTTCTCTTATCACTCTTGATATTTCTTCAACCAATTTCTCAGGAACTTTCCCTTTTGAAAATCTTGTTTCTTGTTATAGTCTTAGTTACATGAACTTGTCTATGAATTTGATAACTTCATCAACATCAAAAAATCATAGCTTTTTAGGGTTTGATAATGGTGGTTTTTCTTCTCTGGTTCAACTTGATATGTCTAGAAACATGTTTTCTGATGTTGATTTTGTTGTGCATGTTGTTACAAAGTTTGAAAGTTTGGTTTTTGTTAATTTCTCTGATAACAGAATCTATGGTGAATTCAGTGATTCTCTTGTTCCTTCTGTGAATTTGGTAACTTTGGATTTGTCTCATAATTTGTTGTTTGGGAAATTACCCTCTAAGATTGTTGGTGATAGCGTTGAAATTTTGGATCTTTCAAGCAACAATTTTTCTTTAGGGTTTTCTGAGTTTGAATTTGGGGATTGTAAGAAGCTTGTTTGGTTGAGTTTATCTCACAATGTGATATCTGATTTTGAGTTTCCTGGAAGTTTGAGAAATTGTCAAAAGATGGAAAGTTTGGATCTTTCCCGAAATCGGTTTAAGATGAAGATTCCCGGTGTTGTTCTTGGCGAGTTGAGGAATTTGAAGGAACTTTATTTAGGGAATAATCATTTTAATGGAGAAATACCTGATGAGCTTGGAAGTGTTTGTGGGAGTTTGGAGATTCTTGATCTTTCTATGAATAAGCTTTCTGGTGAGTTTCCTTTTGTTTTTGAAAATTGTTCATCTTTGAAGATTCTTAACTTAACTAAGAATTATCTCTATGGTGATTTCCTCGACACCGTTGTTCGCAAGCTTTCAAATCTTAGGTATCTGTCAGTGTCGTTCAACAACATAACCGGGAATGTTCCTTTGTCGATTGTTGCAAACTGTACGCAACTTCAAGTTCTTGACTTAAGTGCCAACGGTTTCACCGGCAATGTTCATTCGATATTCTGTCCTTCGAAATTGGAGAAGTTACTTATAGCCGATAATTATCTTTCGGGAAACGTGCCTGCGAAACTTGGTGAATGCAAGAGTTTGAGGACTATTGATTTTAGCTTCAATAATTTGAGTGGTTCAATACCTTTGGAAGTTTGGTTTTTGCCGAATCTTTCTGATTTGATTATGTGGGCTAATAGTCTCACCGGCGAGATTCCGGGGGGAATTTGTGTCAATGGAGGTAACCTCGAGACATTGATTCTTAACAACAATTTCATTTCTGGTTCGATTCCTAAGTCTATTGCGAGTTGTACCAACATGATTTGGGTTTCGCTAGCTAACAACCGCATTACCGGAGAAATACCTGTTGGTATCGGGAATCTGAACGAACTCGCTATTCTCCAATTAGGTAACAATTTACTCGTCGGAAATATTCCTCCCGACATCGGAATGTGCAAGAGATTAATATGGTTGGATTTGACTAGCAATAATCTCACCGGTCCTATTCCGTCCGAGCTCACGAACCAAGCTGGATTGGTTGTTCCCGGGAGAGTTTCCGGTAAACAATTTGTATTTGTGAGAAATGAAGGCGGAACTAATTGCAGAGGCGCCGGAGGACTCGTCGAGTTTGAAGGTATAAGAGTGGAGAGGCTTGAAAATTTACCTATGGTACATTCTTGTCCATTAACAAGAATATATTCTGGTTATACAGTTTATACTTTTACCAACAATGGAAGCATGATCTACCTTGATCTTTCCTACAATTTCTTGTCAGGGACTATTCCGGGAAGTTTCGGTACAATGTCCTATTTGCAGGTCTTAAATCTAGGACACAATCGGCTCGATGGAAAAATTCCAGAAACTTTCGGTCTTTTAAAAGCTATTGGAGTTCTTGATTTATCACATAACAGCCTTCAAGGATTCATACCCGGATCATTACAATCTCTATCATTTCTCAGTGATTTCGATGTGTCGAATAATAACCTTGTCGGACAGATTCCTTCTGGAGGTCAGTTGACAACTTTCCCGGCGTCTCGATACGAAAACAACTCGGACCTTTGCGGTGTTCCGTTACCGCTATGCAGTGCTTCAAATCACTCGGTAGCTTATAATTCGAGGAAGAAGAAGACGCAATCTATTGCAGTTTTGGGTGTCATTTCCGTCCTTTTCTTCCTCTTGTTTATCGTTGTGGTTTTATTGGCTTTATACAGAGTTCGAAAGGTGCGGAAGAAGGACGAATTGAGAGAAAAATACATGGAAAGTCTTCCAACTTCTGGTACCAATAGTTGGAAGCTTTCCGGCTTTCGCGAGCCTTTGAGCATCAATGTCGCTACGTTTGAGAAGCCTTTGCGTAAGTTGACGTTCGCACATCTTCTCGAGGCTACAAACGGTTTCAGCTCCGAAAGCTTGATAGGTTCAGGGGGTTTCGGCGAAGTCTATAAAGCTAAGATGAAAGACGGTAGTGTCGTTGCAATCAAGAAACTCATTCATGTCACAGGTCAGGGTGACAGAGAGTTCATGGCCGAAATGGAAACGATCGGGAAGATTAAGCACCGGAACCTTGTTCCGCTTCTCGGTTACTGTAAAGTCGGAGACGAGAGGCTCCTTGTTTACGAGTACATGAAATATGGAAGTCTAGAAACTGTTCTACACGAGAGAACCAAAAACTCAAAGCTTGCTTGGGAAACAAGAAAGAACATCGCACTAGGATCAGCAAGAGTTAGCACGCTTGCAGGAACACCAGGCTATGTACCACCGGAATACTACCAGAGTTTCCGATGCACGGCAAAAGGCGATGTTTATAGTTACGGTGTCATATTACTAGAACTTCTGTCAGGTAAGAGACCGATCAACTCATCCGAGTTCGGCGACGATAACAATCTTGTTGGATGGTCTAAGAAGCTTTATAGAGAGAGAAGAGTTAGTGAAATACTTGATCCTGATTTGGTTTCGCAAACATCTAGTGAAGGCGAGGCTCTTCAATATTTGAGAATTGCTTTTGAATGTTTGGAGGAAAGACCGTACCGGCGGCCGACGATGATACAAGTGATGGCAATGTTTAAAGAGCTTCAAGCTGTTGACACAGATGATGATGATAGTGTTGTTGATGGTTTCTCTATGAAAGACAATGTGATTGATGAAGCATGA 3516 0.3976 MSCRFSPSTPTTTSKTTCVIVLLHVFVSFTTLTLTSSTTSTTTFDSTTLLNNFKHSNIISDPKNFLSNWSLSSSPCYWQGIICSNSGEITTVNLTGASLSGNTLNLLTFTSIPSLQHLLLHGNFFSSFNFTVSNSKPCSLITLDISSTNFSGTFPFENLVSCYSLSYMNLSMNLITSSTSKNHSFLGFDNGGFSSLVQLDMSRNMFSDVDFVVHVVTKFESLVFVNFSDNRIYGEFSDSLVPSVNLVTLDLSHNLLFGKLPSKIVGDSVEILDLSSNNFSLGFSEFEFGDCKKLVWLSLSHNVISDFEFPGSLRNCQKMESLDLSRNRFKMKIPGVVLGELRNLKELYLGNNHFNGEIPDELGSVCGSLEILDLSMNKLSGEFPFVFENCSSLKILNLTKNYLYGDFLDTVVRKLSNLRYLSVSFNNITGNVPLSIVANCTQLQVLDLSANGFTGNVHSIFCPSKLEKLLIADNYLSGNVPAKLGECKSLRTIDFSFNNLSGSIPLEVWFLPNLSDLIMWANSLTGEIPGGICVNGGNLETLILNNNFISGSIPKSIASCTNMIWVSLANNRITGEIPVGIGNLNELAILQLGNNLLVGNIPPDIGMCKRLIWLDLTSNNLTGPIPSELTNQAGLVVPGRVSGKQFVFVRNEGGTNCRGAGGLVEFEGIRVERLENLPMVHSCPLTRIYSGYTVYTFTNNGSMIYLDLSYNFLSGTIPGSFGTMSYLQVLNLGHNRLDGKIPETFGLLKAIGVLDLSHNSLQGFIPGSLQSLSFLSDFDVSNNNLVGQIPSGGQLTTFPASRYENNSDLCGVPLPLCSASNHSVAYNSRKKKTQSIAVLGVISVLFFLLFIVVVLLALYRVRKVRKKDELREKYMESLPTSGTNSWKLSGFREPLSINVATFEKPLRKLTFAHLLEATNGFSSESLIGSGGFGEVYKAKMKDGSVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGDERLLVYEYMKYGSLETVLHERTKNSKLAWETRKNIALGSARVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPINSSEFGDDNNLVGWSKKLYRERRVSEILDPDLVSQTSSEGEALQYLRIAFECLEERPYRRPTMIQVMAMFKELQAVDTDDDDSVVDGFSMKDNVIDEA* 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5305 1171 SUPERFAMILY L domain-like 49 405 - -
Psa5g5305 1171 Pfam Brassinosteroid receptor island domain 634 698 IPR045381 -
Psa5g5305 1171 Pfam Protein tyrosine and serine/threonine kinase 924 1018 IPR001245 GO:0004672|GO:0006468
Psa5g5305 1171 Gene3D - 641 698 - -
Psa5g5305 1171 Pfam Leucine rich repeat N-terminal domain 50 84 IPR013210 -
Psa5g5305 1171 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 26 1029 - -
Psa5g5305 1171 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1030 1154 - -
Psa5g5305 1171 Pfam Leucine Rich Repeat 343 363 IPR001611 GO:0005515
Psa5g5305 1171 Pfam Leucine rich repeat 726 785 IPR001611 GO:0005515
Psa5g5305 1171 Pfam Leucine rich repeat 269 329 IPR001611 GO:0005515
Psa5g5305 1171 Pfam Leucine rich repeat 368 428 IPR001611 GO:0005515
Psa5g5305 1171 SUPERFAMILY L domain-like 322 805 - -
Psa5g5305 1171 Pfam Protein kinase domain 1029 1141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5305 1171 Gene3D Phosphorylase Kinase; domain 1 884 996 - -
Psa5g5305 1171 Gene3D Ribonuclease Inhibitor 194 817 IPR032675 -
Psa5g5305 1171 Gene3D Ribonuclease Inhibitor 40 151 IPR032675 -
Psa5g5305 1171 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 1 26 1029 - -
Psa5g5305 1171 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 1 1030 1154 - -
Psa5g5305 1171 ProSiteProfiles Leucine-rich repeat profile. 293 314 IPR001611 GO:0005515
Psa5g5305 1171 ProSitePatterns Protein kinases ATP-binding region signature. 927 950 IPR017441 GO:0005524
Psa5g5305 1171 Gene3D Transferase(Phosphotransferase) domain 1 1025 1165 - -
Psa5g5305 1171 ProSiteProfiles Protein kinase domain profile. 921 1171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5305 1171 SUPERFAMILY Protein kinase-like (PK-like) 905 1147 IPR011009 -
Psa5g5305 1171 SMART LRR_typ_2 724 747 IPR003591 -
Psa5g5305 1171 SMART LRR_typ_2 511 535 IPR003591 -
Psa5g5305 1171 SMART LRR_typ_2 748 771 IPR003591 -
Psa5g5305 1171 SMART LRR_typ_2 584 608 IPR003591 -
Psa5g5305 1171 SMART LRR_typ_2 341 365 IPR003591 -
Psa5g5305 1171 SMART LRR_typ_2 415 439 IPR003591 -
Psa5g5305 1171 SMART LRR_typ_2 112 135 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5305 Psa-Chr5 463594317 463597982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5305 19 1170 Receptor kinase-like Gene Family AT1G55610 55.062 0.0 1267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Psa5g5305 Pkinase 9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5305 - - gmx:100779072 1487.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5305 5 463594317 463597982 Psa5g5305 5 463594317 463597982 ECH