Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5304 ATGGCTTCCTCATCGAGCAGCGGCTTAACATTCAAGCTACATCCACTGGTAATCGTAAACATCTCCGATCATTACACGAGGGTTAAGTCTCAGATGAACCCTACACTTGCTCCTCACAACAACACAACCAACAACGGCGTCGACGGCGTCGTTTCTTCCATTCCGCCGCGTGTATTCGGCTGTGTAATCGGTGTTCAGAAAGGTCGCACCGTTGAAATATTCAACAGCTTCGAACTCCTATACGATCCTTCTACTCACTCTCTTGATCGTCCTTTCCTTGAGAAGAAGCAAGAACTCTATAAGAAGGTTTTTCCACACTTCTACATACTGGGATGGTATTCCACTGGGAGTGATGCAGAGGAATCTGATATGCATATTCACAAAGCTTTGATGGATATCAATGAGAGTCCAGTTTATGTTCTTCTAAACCCTGCGATCAATCATTCTCAGAAGGATCTTCCTGTCAGTATATTTGAAAGTGAATTGCATGTCATAGACGGGATTCCACAACTTATCTTTGTTCGGTCAAGCTATACTATTGAGACTGTTGAAGCAGAACGGATCTCAGTTGATCATGTTGCTCATCTAAAGCCATCTGATGGTGGTTCAGCAGCTACACAATTGGCTGCTAACCTTACTGGTATACACAGCGCAATCAAAATGCTTCATAGCAGAATAAAGGTGCTACATCACTATCTTCTTGCAATGGAAAAAGGTGATGTTCCTTGTGAGAATTCACTATTAAGGCAAGTGTCGAGTCTCCTGAGAAGATTACCTGCTATTGAATCTGGAAAATTTCAAGATGATTTTTTGATGGAATACAATGACACCTTGTTGATTAGTTACCTTGCCATGCTGACCAACTGCTCAAGTGCAATGAATGATTTGGTGGACAAGTTCGGTACTGCGTATGATAGACATACCAGAAGAGGTGGACGAACTGCTTTCATAGGCAAAATTGACGTTCATCGGTGA 975 0.4256 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPHNNTTNNGVDGVVSSIPPRVFGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPAINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAANLTGIHSAIKMLHSRIKVLHHYLLAMEKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFGTAYDRHTRRGGRTAFIGKIDVHR* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5304 324 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 136 IPR000555 GO:0005515|GO:0008233|GO:0008237
Psa5g5304 324 Gene3D Cytidine Deaminase, domain 2 1 198 - -
Psa5g5304 324 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 317 - -
Psa5g5304 324 CDD MPN_CSN6 9 313 IPR033859 GO:0000338|GO:0008180
Psa5g5304 324 SMART pad1_6 10 163 IPR000555 GO:0005515|GO:0008233|GO:0008237
Psa5g5304 324 Pfam Maintenance of mitochondrial structure and function 184 298 IPR024969 -
Psa5g5304 324 ProSiteProfiles MPN domain profile. 11 164 IPR037518 -
Psa5g5304 324 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 317 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5304 2 268 Eukaryotic Initiation Factors Gene Family AT2G39990 22.426 2.17e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5304 K12179 - gmx:100797079 584.334