Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5301 ATGGCAATCATACATCAAGGAAACCATTCCATCTTGAAACTTTGTTGTTCATCCAACCGTGCTATAACCTTAATACAGAAGGTTATAGCAGAAGTTATTGGAACATATTTTCTTGTATTTGCAGGGTGTGGAGTTGTAGCAGTGGACAAAATCTATGGCTCCATAACATTTCCAGGGATATGTATCACTTGGGGTTTGATTGTAACCGTTATGTGTTATTCTGTTGGCCATATCTCCGGAGGACTCTTCAACCCCGCGGTGACGATAACCTGGGCCATCTTTCGCAGAATCAAAATCATCGAAGCTCCACTTTACATTGCTGCTGAGTTACTCGGTTCAACACTTGCGAGTTTAACATTATCTTTAATGTTTGATATTACACCAAAATCTTATTTTGGAACTGTGCCGGTTGGATCAAGTGGTCAATCTTTAGCTATGGAATTCATTATCAGTTTTCTGTTAATGTTTGTTATTTCAGCTGTTACAACAGACCATAGAGCGGTGGATGATTCAGCGAGTATTGCAGTTGGAATGACGATAACGTTGAATCTGTTTATAGCTGGACCTGTTTCAGGTGCATCTATGAATCCAGCAAGAAGTATTGGACCTGCAATTGTGGTGCATATTTACAATGGTTTATGGATATATGTAGTTGGTCCAATTGTTGGAGCTGTAGCTGGAGCACTTGCGTATAACTTTCTTAGATCTGTATACAAACCAAGGGCAGAAATATCAGCAGAAACGCCGGTTTCAGAATTAACAACAGAAAAGCTGAATTCAGATTTAACAGCAGAAGAACCATTGAGGAGCATAAGTATAAGTTGA 825 0.3939 MAIIHQGNHSILKLCCSSNRAITLIQKVIAEVIGTYFLVFAGCGVVAVDKIYGSITFPGICITWGLIVTVMCYSVGHISGGLFNPAVTITWAIFRRIKIIEAPLYIAAELLGSTLASLTLSLMFDITPKSYFGTVPVGSSGQSLAMEFIISFLLMFVISAVTTDHRAVDDSASIAVGMTITLNLFIAGPVSGASMNPARSIGPAIVVHIYNGLWIYVVGPIVGAVAGALAYNFLRSVYKPRAEISAETPVSELTTEKLNSDLTAEEPLRSISIS* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5301 274 SUPERFAMILY Aquaporin-like 22 241 IPR023271 -
Psa5g5301 274 Gene3D Glycerol uptake facilitator protein. 5 247 IPR023271 -
Psa5g5301 274 PANTHER AQUAPORIN NIP2-1 12 244 IPR034294 -
Psa5g5301 274 PANTHER AQUAPORIN NIP4-1-RELATED 12 244 - -
Psa5g5301 274 CDD MIP 26 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5301 274 TIGRFAM MIP: MIP family channel proteins 30 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5301 274 Pfam Major intrinsic protein 21 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5301 274 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5301 274 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5301 274 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5301 274 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5301 274 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5301 274 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5301 Psa-Chr5 463340575 463342010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5301 16 261 Major Intrinsic Protein MIP AT5G37820 61.134 2.64e-106 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5301 K09874 - gmx:100791338 335.495