Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5285 ATGATTCTTGACAAATATGACATTGAGGAAACTCATTATGAGGTTCTCAATATTCAGGAAGATGCAGATTATGAAGAAATTCGGGCTAGTTACCGAAGTGCTGTACTCAGTTTACATCCTGATAAACTATTGAAGACATTCGATACAACCGACAGTAATCAAACAAGTACAGAGAGATTTCTCAGAGTACAAAAGGCATGGGAAGTTCTTAACGATTCAAGCTCTCGTGTATTCTATGATAAGCAGCTGCAAAGTTCACGGCGAGATGCCTTGGCTGCCGAAGTTGCAGAAGATTTAAGCTTACATGATATGGAAGCTGAAGATGCCGATGAAGCATTAGAACTGTTTTATCAGTGCCGGTGTGGTGATTACTTCTCTGTTGACTCGTTGGAATTGCTAAAAATGGGGTATTCTTTGTTGAGAGATGGAAGCAGTATATCTATACTCAATAGGGATACTTTACCAGGATCGGTGATTCTTCCCTGTGGATCTTGTTCGTTAAAAGCTCGGCTCGTACTCAGTGTGGGATAA 531 0.4049 MILDKYDIEETHYEVLNIQEDADYEEIRASYRSAVLSLHPDKLLKTFDTTDSNQTSTERFLRVQKAWEVLNDSSSRVFYDKQLQSSRRDALAAEVAEDLSLHDMEAEDADEALELFYQCRCGDYFSVDSLELLKMGYSLLRDGSSISILNRDTLPGSVILPCGSCSLKARLVLSVG* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5285 176 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 95 174 IPR007872 -
Psa5g5285 176 SMART dnaj_3 10 75 IPR001623 -
Psa5g5285 176 Pfam DnaJ domain 11 80 IPR001623 -
Psa5g5285 176 Pfam CSL zinc finger 99 172 IPR007872 -
Psa5g5285 176 PRINTS DnaJ domain signature 13 31 IPR001623 -
Psa5g5285 176 PRINTS DnaJ domain signature 31 46 IPR001623 -
Psa5g5285 176 PRINTS DnaJ domain signature 55 75 IPR001623 -
Psa5g5285 176 PANTHER DPH3 HOMOLOG-RELATED 1 173 IPR044248 GO:0017183|GO:0046872
Psa5g5285 176 SUPERFAMILY Chaperone J-domain 9 79 IPR036869 -
Psa5g5285 176 CDD DnaJ 11 72 IPR001623 -
Psa5g5285 176 SUPERFAMILY CSL zinc finger 96 173 IPR036671 -
Psa5g5285 176 Gene3D DPH Zinc finger 98 174 IPR036671 -
Psa5g5285 176 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Psa5g5285 176 PANTHER DIPHTHAMIDE BIOSYNTHESIS PROTEIN 4 1 173 - -
Psa5g5285 176 Gene3D DnaJ domain 4 97 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5285 Psa-Chr5 462457075 462459474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5285 12 80 C2H2 Transcription Factor Family AT1G74250 42.029 1.09e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5285 K17867 - gmx:100814856 267.7