Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5282 ATGGATTCTAATAGGCCACTTTTGTTACAATCACCAAGAACACCAAATGATCAAGAATTTCCAACACTTCCGGTTTTTCCTGAATTACCGAAATCGAAGTCAAGTTCAAGCAACACAGTAACATTTTCTGGTGTGGAATATGGTATTCAAGTTGATAATAAGAATTCTTCAAACTCATCAACTTCATCATCAAGTAAAAGTGCTATGTCGATTCATTCAATGAGTTCTAGCAAGAGGAACAATAGTTTAAACAACTCAGGATCAAGAAAATCTGTGAGGTATGGTTCAAAAGGTGGTGGTGATTCTGATGGGTTAAGCATGTCACAGAGAGAGTTAAGAGATGAAGATGCAAGATTGGTTTACATCAATGATCCTGATAAAACAAATGAGAATTTCGAGTTTTTCGGAAATTCGATAAGAACTGCTAAATACTCAATTCTCACTTTCATTCCGAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATGTATATTTTCTCATCATTGCTATTCTTAATCAGCTTCCTCAGCTTGCGGTTTTCGGACGATACGTTTCGATTCTACCGTTAGCTTTCGTTCTGTTTGTGACCGGTGTGAAGGATGCTTTTGAGGATTGGAGGAGACACAATTCAGATAAAGTTGAGAACAACAGGTTAGCATCAGTTTTGATTCATGATGGTAGTTTTGTAGAGAAGAAATGGAAGGATATTAGGGTTGGTGAGATTGTGAAAATTAAAACAAATGAAACAATTCCTTGTGACATTGTTTTGTTATCAACTAGTGATTCAACTGGTGTTGCATATGTTCAAACTATTAATCTCGACGGCGAATCGAATTTGAAGACTCGGTACGCGAAAATGGAGACAGGTTTAAAGATTCAACCGAGGTTTAAAGGATTGATTAAGTGTGAGAAACCGAATCGGAACATATACGGATTCATGGCGAATATGGAGATTGATGGGAAGAAGTTATCTCTTGGATCAACCAACATTGTGCTTAGAGGATGTGAGCTCAAGAATACTAGTTGGGCGCTTGGTGTCGCGGTCTACTGCGGCCGCGACACCAAAGCTATGCTCAATAGTTCTGGAGCTCCGTCGAAGAGGAGTCGGCTAGAGACACGGATGAATTACGAAATCATCATGTTGTCTTTCTTTCTTGTTGCATTGTGTACGATTACATCGGTTTGTGCAGCGGTTTGGTTGAAGCGCCATAAGGACGAGCTGAATCTGTTGCCTTATTATAGGAAACTTGATTTTTCGGAGGCGAAAGTTGAAGACTATAAGTACTACGGATGGGGATTGGAAATCTTTTTCACATTCCTTATGTCTGTTATAGTTTATCAGGTCATGATTCCTATTGCTTTGTATATTTCTATGGAGCTTGTTCGCGTCGGTCAGGCCTATTTCATGATCGAAGACGATCGGTTGTTTGATCAAGCTACGAATTCAAGGTTTCAATGCAGGGCTTTGAATATTAATGAAGATTTGGGGCAAATTAAGTATGTGTTTTCGGATAAAACGGGGACACTTACCGAGAATAAGATGGAGTTTCAATGTGCTAGCATTTGGGGAGTTGATTACAGTTCCACAAAAGTCGGCATTGAGGGTGAAGAAATCGAATACTCGGTGCAAGTTGATGGAAATGTGTTGAAACCGAAGATGAAAGTGAAAGTTAATCCCGAGCTTTTGAAATTGGCGAGAAATGGATTTCAAAATGTGGAAGGAAAAAGGATTTACGAGTTCTTTCTAGCACTTGCAACCTGTAACACTATTGTGCCTCTTGTTGTTGACACACCTGATCCTGATGTCAAGCTGTTAGATTAA 1824 0.3909 MDSNRPLLLQSPRTPNDQEFPTLPVFPELPKSKSSSSNTVTFSGVEYGIQVDNKNSSNSSTSSSSKSAMSIHSMSSSKRNNSLNNSGSRKSVRYGSKGGGDSDGLSMSQRELRDEDARLVYINDPDKTNENFEFFGNSIRTAKYSILTFIPRNLFEQFHRVAYVYFLIIAILNQLPQLAVFGRYVSILPLAFVLFVTGVKDAFEDWRRHNSDKVENNRLASVLIHDGSFVEKKWKDIRVGEIVKIKTNETIPCDIVLLSTSDSTGVAYVQTINLDGESNLKTRYAKMETGLKIQPRFKGLIKCEKPNRNIYGFMANMEIDGKKLSLGSTNIVLRGCELKNTSWALGVAVYCGRDTKAMLNSSGAPSKRSRLETRMNYEIIMLSFFLVALCTITSVCAAVWLKRHKDELNLLPYYRKLDFSEAKVEDYKYYGWGLEIFFTFLMSVIVYQVMIPIALYISMELVRVGQAYFMIEDDRLFDQATNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSTKVGIEGEEIEYSVQVDGNVLKPKMKVKVNPELLKLARNGFQNVEGKRIYEFFLALATCNTIVPLVVDTPDPDVKLLD* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5282 607 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 134 598 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Psa5g5282 607 MobiDBLite consensus disorder prediction 53 109 - -
Psa5g5282 607 MobiDBLite consensus disorder prediction 53 92 - -
Psa5g5282 607 Gene3D - 199 360 - -
Psa5g5282 607 SUPERFAMILY Calcium ATPase, transmembrane domain M 135 497 IPR023298 -
Psa5g5282 607 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 435 524 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa5g5282 607 MobiDBLite consensus disorder prediction 1 18 - -
Psa5g5282 607 SUPERFAMILY Calcium ATPase, transduction domain A 222 357 IPR008250 -
Psa5g5282 607 SUPERFAMILY HAD-like 490 526 IPR036412 -
Psa5g5282 607 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 9 607 - -
Psa5g5282 607 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 9 607 - -
Psa5g5282 607 Pfam Phospholipid-translocating ATPase N-terminal 120 187 IPR032631 -
Psa5g5282 607 ProSitePatterns E1-E2 ATPases phosphorylation site. 505 511 IPR018303 -
Psa5g5282 607 Pfam E1-E2 ATPase 221 461 - -
Psa5g5282 607 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5282 Psa-Chr5 462336948 462339929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5282 76 607 Primary Pumps ATPases AT5G04930 68.156 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5282 K14802 - gmx:100813982 843.573