Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5272 ATGACCAATATTCTCCATATCAAAAAATCTGTTATTATTTTCAATATAGTATTCTTCTTGTTCTTCTCTCAATTATCCACCGCAATTGATACAATCACTCAATTTCAATCTCTTGATTATGGCAATACCTTGGTTTCCAAAGATGGAACATTTGAGTTAGGATTTTTCAGACCAGGTAGTTCCATAAATCACTATGTTGGAATATGGTTCAAAAACATCCCAAATAGAAGAATAGTTTGGGTTGCAAACCGTGATAATCCAATCAAAGACAACAATTCCAATTCAACCATGTTGATCATAAACAAAGAAGGCAACCTAGTACTACTTGCCAACAACAATCAAACTCTTGTTTGGTCAACAAACATCACAACACAATCTTTGTCTACTACATCTTCTCATGTGGCTCAACTATTAGATAATGGAAACTTTGTCATCCAAGACAAGAATAATTTTCTATGGCAAGGTTTTGACTTTCCCTGTGATACTTTGTTGCCAGAAATGAAGCTTGGTTGGGACCTAAAAACTGGTCTTAATCGTCGATTAACTTCGTGGAGAAATTGGGATGATCCATCTTCGGGAGACTTAACTTGGGATATGGTCCTTAGTAGTAATCCAGAAATTGTTCTGAAAAAAGAATCAGTTGAGTTCTATAGGAGTGGTCCTTGGAATGGTGTTGGATTTAGTGGATCACCCGAGTTAAGTGCGAATCCAATTATCGAACAAAAATTTGTGAATAATTCAAACGAAGTTTACTACACATATAGTCTTGTGAGCAAGAGTAAGGTTTCAATAATTTATTTGAACCAAACAAGTGGTCTTCGTGAACGTGTTATATGGATTCCAGAAGACAAAGATTGGAAGACTTTTGCGTCTGTGCCAAGAGATGAATGTGATGCTTATAATCTTTGTGGATCCTATGGAAATTGTATTCCTAGTAAATCTCCAATGTGTGAATGTTTAGATGGATTCGAGCCCAAATTGAAAGAGAATTGGGACAGGTATAATTGGACACAGGGATGTGTTCGCAAAATTCACCCTGCATTTAAATGCCGGGTGAATGATGGTTTTAAAAAGATTTTTGGATTGAAATTGCCGGAAACAAAACATACTTGGGTTGATGCTAGAATGAAAATTGAGGATTGTAAGAGAAAATGCTTGGAAGATTGTTCTTGTACGGCATATTCAAACTTGGATGTTAATGGAGATGGTAGTGGTTGTTGTATATGGTTTGGTGATCTTATTGGTTTGAAACAGGTTTCATCAATTAATCCAGATCTGTATGTTCGAATGGATGCCTCTACATCAGATTCAAAGGGAGAAGTTTCGAGTGAGAATAAGAAAAGTCATACTTTGGCAATTGCAATCGCTATTCCATTGGTCATTGTTTTGCTACTCGTGATCATAGTCTTCTACATTTTCACGAGAAAAAGAAAGCAAAGAGATGAAGATAAAGATGAAAACCAACAAGATTTTGAGCTTCCTTTGTTCAATCTTTCTACGATGATAGAAGCCACCGATAACTTCTCGGATGATAACAAACTTGGAGAAGGTGGTTTTGGGCCAGTGTATAAGGGTAAACTTGTTTCAAACAAACGAGAAATTGCAGTCAAAAGGCTTTCAAGAAATTCGAAACAAGGAACAAAAGAATTTCAAAATGAAGTTATATTATGTTCAAAACTTCAACATCGAAATCTGGTCAAAGTTCTTGGTTGTTGTATTCAAGGAAAGGAGATAATGCTTATCTATGAATATATGCCTAACAAAAGTTTAGATTCATTTCTTTTTGATCCAACTCAAAAGAAACTTTTAGATTGGTCTAAACGCTTTAACATCATATGTGGAATCACACGGGGACTTCTTTATCTTCATCAAGATTCTAGATTGAGAGTCATACATAGAGATCTAAAACCAAGTAATATTCTGTTGGACAATGACATGAATCCAAAAATTTCAGATTTTGGCTTGGCAAAAATTTGCGGGGATGACCAAATTGAGGGGAATACAAACAGAGTTGTTGGAACATATGGTTATATGGCTCCTGAGTATGTCATTGATGGGCTATTCTCCGTAAAATCTGATGTATTTAGCTTTGGCATATTATTACTAGAGATTGTAAGTGGAAAGAAAAATAAAGGACTTATCTATACAAGCAGCAACCATAGTCTCGTTGGACATGCTTGGAGGTTGTGGAAAGAGGGAAACTCAAAAGAATTAATTGATGATTGTTTAGATAACTCATATATTCTATCTGAAGCTTTACGTTGCATACAAGTTGGTCTTTTATGTCTACAACGCCATCCAAATAATAGACCTAATATGGCATCCGTGCTTGCAATGTTGACAAATGAAATTGCTGTAACTCAACCAAAGGAACCTGACTTCTTAATAGGAGGGGTCTCTAATGAGGGACAACCTAATGTGAAAAATTCAATTTCTTTTTCAATCAATGAAGTTACTATTTCTTCATTGGATGTTAGATGA 2481 0.3539 MTNILHIKKSVIIFNIVFFLFFSQLSTAIDTITQFQSLDYGNTLVSKDGTFELGFFRPGSSINHYVGIWFKNIPNRRIVWVANRDNPIKDNNSNSTMLIINKEGNLVLLANNNQTLVWSTNITTQSLSTTSSHVAQLLDNGNFVIQDKNNFLWQGFDFPCDTLLPEMKLGWDLKTGLNRRLTSWRNWDDPSSGDLTWDMVLSSNPEIVLKKESVEFYRSGPWNGVGFSGSPELSANPIIEQKFVNNSNEVYYTYSLVSKSKVSIIYLNQTSGLRERVIWIPEDKDWKTFASVPRDECDAYNLCGSYGNCIPSKSPMCECLDGFEPKLKENWDRYNWTQGCVRKIHPAFKCRVNDGFKKIFGLKLPETKHTWVDARMKIEDCKRKCLEDCSCTAYSNLDVNGDGSGCCIWFGDLIGLKQVSSINPDLYVRMDASTSDSKGEVSSENKKSHTLAIAIAIPLVIVLLLVIIVFYIFTRKRKQRDEDKDENQQDFELPLFNLSTMIEATDNFSDDNKLGEGGFGPVYKGKLVSNKREIAVKRLSRNSKQGTKEFQNEVILCSKLQHRNLVKVLGCCIQGKEIMLIYEYMPNKSLDSFLFDPTQKKLLDWSKRFNIICGITRGLLYLHQDSRLRVIHRDLKPSNILLDNDMNPKISDFGLAKICGDDQIEGNTNRVVGTYGYMAPEYVIDGLFSVKSDVFSFGILLLEIVSGKKNKGLIYTSSNHSLVGHAWRLWKEGNSKELIDDCLDNSYILSEALRCIQVGLLCLQRHPNNRPNMASVLAMLTNEIAVTQPKEPDFLIGGVSNEGQPNVKNSISFSINEVTISSLDVR* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5272 826 ProSiteProfiles Protein kinase domain profile. 508 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5272 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 190 IPR036426 -
Psa5g5272 826 SMART serkin_6 508 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5272 826 Pfam D-mannose binding lectin 78 185 IPR001480 -
Psa5g5272 826 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Psa5g5272 826 SMART blect_4 35 159 IPR001480 -
Psa5g5272 826 CDD STKc_IRAK 514 782 - -
Psa5g5272 826 SMART ntp_6 351 430 IPR003609 -
Psa5g5272 826 Gene3D Phosphorylase Kinase; domain 1 481 584 - -
Psa5g5272 826 Pfam Protein kinase domain 509 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5272 826 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Psa5g5272 826 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 819 - -
Psa5g5272 826 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 37 819 - -
Psa5g5272 826 SUPERFAMILY Protein kinase-like (PK-like) 490 792 IPR011009 -
Psa5g5272 826 PIRSF SRK 1 826 IPR024171 GO:0004674
Psa5g5272 826 Gene3D Transferase(Phosphotransferase) domain 1 585 792 - -
Psa5g5272 826 ProSiteProfiles PAN/Apple domain profile. 350 432 IPR003609 -
Psa5g5272 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Psa5g5272 826 Gene3D Hepatocyte Growth Factor 347 428 - -
Psa5g5272 826 Pfam PAN-like domain 350 414 IPR003609 -
Psa5g5272 826 Gene3D - 23 155 IPR036426 -
Psa5g5272 826 ProSiteProfiles Bulb-type lectin domain profile. 29 158 IPR001480 -
Psa5g5272 826 CDD PAN_AP_plant 351 429 - -
Psa5g5272 826 CDD B_lectin 41 159 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5272 Psa-Chr5 462221134 462226848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5272 448 795 Receptor kinase-like Gene Family AT4G23190 51.549 2.31e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa5g5272 Pkinase 9.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5272 - - mtr:MTR_3g007630 1239.17