Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5268 ATGCTGATTTTATCATCAGGGCATGGAAGCGGGTACCAATCTAACTGTCCACCCTCATTCACTTGTGGAAATCGTGGAATTTTTCGTTACCCTTTCACTAAGGCAGAACAACCCGACTGTGGCTTGATATTCATATATGGTTGTGGTGGAAGTTATTATTCACCCAAATTGATCCAACTGGAGAAGAATGCAAAAAACACAGAGCTAACTGCTGTCATTGACCAGAATACCATTACGCTTTCTGATCCAGATTTTTACAAGCGTTTGCAACATAATGTTTGTGACACTTTGAACCACAACTACACTCTTCCTCCCCCTTCTCCTTTGGTTTCTTTTTATATAAATTATAATGTAACTCTCTTCCAGTGCAACCATAGCCACAATTTCAATCCCCCTTCAGAGTATTTTAAATACAACTGCCCTTCCTTCGATATCTATTATGACAGAAAGCAGCATTCCAATGTTACTAAAGAGAAAGCGCGTAGTTTTTTCTCATCCTGCTCCCTACTTCAGTTTCCATCTAAAGACTTGACTGATACCGAAAACATCTTATCATTTGTATCTGGTCAGATGGTTGTTAAAATAGTATTATCTGCTGATTGTGAAGAGTGCTGCAACCACAGAGGAGGCCAATGTAGACTTAATGCAAACAATAAGTTCTACTGTCACAATGATGAATTTCTCAGATCATATATTCCATTTGTTGATGTACGGTTTACTTATAAAGTTACTTTCAAAATGGCTTCTGTTGCAGAGCCGAAGAATAAGAGAAATTATTTTAAGCTGCTACTTGGACTTGGAATAGGTGATCTAGCAAGAATAGACACACTGCCTTGGCATATCAGGATGAAAATTGCCATAGAGACAGCGAGTGTATTGGCTTATCTGCATGCTTCTGGCATCATTCACCGTGATGTGAAAACCAAAAACATTCTCCTTACAAACAGCTTCAGTGTCAAAGTTGCAGATTTTGGTCTTTCAAGACTATTCCCCCACGATATCACTCATGCATCCACGACACCACAAGGGACACCAGGTTACGTTGACCCGGACTATCATCAATGCTACCAGCTTACTAACAAGAGTGATGTATACAGTTTTGGTGTTGTGCTCGTTGAGCTAATATCATCTAAGCTTGCTGTTGATATGAACAGGCATAAGGATGAGATTAACTTGTCAAACCTGGCCTTAAAGAAGATCCAGAAGGGTGAATTTACTGAGCTGGTGGATCCAAATCTTGGTTTTGATTCAGACAATGAGGTTAAGAGGATGATAGTTTCGGTGGCAGAGTTGGCTTTTCAATGTTTGCAAAGGGAAAAGGAATTGAGACCTTCCATGGATGAG 1344 0.3981 MLILSSGHGSGYQSNCPPSFTCGNRGIFRYPFTKAEQPDCGLIFIYGCGGSYYSPKLIQLEKNAKNTELTAVIDQNTITLSDPDFYKRLQHNVCDTLNHNYTLPPPSPLVSFYINYNVTLFQCNHSHNFNPPSEYFKYNCPSFDIYYDRKQHSNVTKEKARSFFSSCSLLQFPSKDLTDTENILSFVSGQMVVKIVLSADCEECCNHRGGQCRLNANNKFYCHNDEFLRSYIPFVDVRFTYKVTFKMASVAEPKNKRNYFKLLLGLGIGDLARIDTLPWHIRMKIAIETASVLAYLHASGIIHRDVKTKNILLTNSFSVKVADFGLSRLFPHDITHASTTPQGTPGYVDPDYHQCYQLTNKSDVYSFGVVLVELISSKLAVDMNRHKDEINLSNLALKKIQKGEFTELVDPNLGFDSDNEVKRMIVSVAELAFQCLQREKELRPSMDE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5268 448 Gene3D Transferase(Phosphotransferase) domain 1 270 448 - -
Psa5g5268 448 SMART serkin_6 164 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5268 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Psa5g5268 448 ProSiteProfiles Protein kinase domain profile. 153 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5268 448 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 276 448 - -
Psa5g5268 448 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 13 224 - -
Psa5g5268 448 Pfam Protein kinase domain 282 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5268 448 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 224 IPR044652 -
Psa5g5268 448 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 276 448 IPR044652 -
Psa5g5268 448 SUPERFAMILY Protein kinase-like (PK-like) 275 448 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5268 Psa-Chr5 462147553 462149113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5268 277 448 Receptor kinase-like Gene Family AT1G25390 68.023 4.70e-75 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Psa5g5268 Pkinase 2.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5268 - - cam:101488413 382.104