Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5243 ATGGATAGGATTCAAGAGGGAGATGAAAATGGTAAATGTTCAGTTGTTGGTTTAGCAATCAAAGGTAACAAGAAAAGCAAGTATGTTGTACAATGGGCACTTGATAAATTTGTTGCTGAAGGAGTGCTTATTTTCAAGCTTATTCATGTTAGGGCTGTTATCAAAGGAGTTCCAACACCAATGGGAGACGTGCTTCCTCTTTCGCAAGTGCGGAATGACGTAGCAATGGCTTTCAAAAGGGAAATCGAGTGGCAAACAAATCATATGATTCTACCTTTTAAGAGCTTGTGCGAACAAAGAAAGGTGCATGTAGATGTTGTAGTGATTGAATCGGATGATGTAGTAACTGCGATAGCAGAGGAAGTAACTAAGGATGCTATAACCAAACTTGTCGTTGGAGCTTCGTCTTCCGGTATTTTCAGAAGTAAACATAAGGGTATGTCTGCAAAAATCTCGGTAAGCACTCCAACATTTTGTACGGTTTACGCTGTTTCAAAGGGAAAATTGTCCATACGGCAGTCAGACACGCGGATTGATGGAAATATTACCGACAACACAAGTGAAATCAGTTTTTCGTCAACCAGCTCGTCAAACTACACTTCCACCACTCACACAGATTCTGGCTCAGTTGCATCATATGCTCCCTTACACCCCTCTCCCCTTGCAACACGACGAGTTAAAGCTCTCTCGGGTGTCGAACAAACTCTCTCGAGTTTAGATGTAACTAATCATTCTAGAGGTCAGTCTCTAGATCTTGGGAGAAAGAATGCAGCTACAAGTTCTTCTAAAAACTCAGATGTTGATCATTACATAAGTCAGGCATCTAGCTCCGAAAGCATTTCAGATACCGAATCTCGCTTTTATGATCAAAATTCGGCCATGTTTGTGCCTCAAGTTACTAATCCTCGATCACCAAATAGACAGGAAAACATTAACCTTGAGCTGCAAAAGTTGAGAATTGAACTAAGACATGCACAAGGAATGCATGCAGTAGCTCAAAGTGAGAACACTGATGCATCACAAAAGTTGAATGAACTAAACAAGAGAAGATTAGAAGAATCCATGAAAATGAAGGAGATAATTGCCAAGGAAGAGATGGCCAAGGAATTAGCAAATCAAGAAAGAGAGAAATACGAAGCTGCAGCTAGAGAGGCTGAATATTTGAAACAATGTGCTGAAAGAGAAGCTGCGGAAAGAAAAGGAACAGAGTTGAAAGCTATCCATGCTGCCAAAGAGAAAGAAAAACTTGAGGATGCTCTGAGTGGCTCCACGCCTCAGTACCGAGTTTTTACGTGGGATGAAATAGTTTCAGCTACTTCATCTTTCTCGGAAAATCTGAGAATCGGAATGGGCGCATATGGAATGGTGTACAAGTGCACTTTGCATCACACAACTGTTGCTGTTAAAGTTATCCACTCTAATGGAATCCGCATAAGCAAGCAATTCGAACAAGAGTTAGAGATATTGAGCCGAATTCGTCATCCGAACTTGCTTCTTCTTCTCGGTGCATGTCCCGATCACGGATGCCTTGTGTATGAATATATGGAAAATGGAAACTTGGAAGATAGACTACTCCAGAAAAACGGTAATAGCCAAATCCCGTGGTTTGTTAGGTTTCGAATAGCTTGGGAAATCGCGTCGGCTCTTTCCTTTCTTCACAGCACAAAGCCACAACCTATCATCCACCGTGACTTGAAACCGGCAAACATCTTGCTTGGTGGTAACCTTGTCAGCAAGATTGGTGATGTCGGTCTTTCTACAATCCTTGACTCAGATAACTTATCTGCCATGTATAAGGACACGGCGCCTGTTGGAACACTCAGCTACATCGATCCTGAATATCAAAGAAGTGGTTTAATATCTACGAAATCCGATGTTTATGCTTTCGGATTAGTGATGTTACAGTTATTGACAGCAAAACCAGCCATAGCACTTACTCACATAGTTGAAACCGCTATTGATGATGGTAATTTAGCAGATATGTTGGATCCAAAAGCAGGATCATGGCCTATACAAGAGACACTGGAAATAGCTCGGTTAGCATTGAGCTGTGCAGAGATGCGGCGTAAGGATCGACCTGATTTGAATGATCATGTGCTACCAATGCTAGAGAGGTTGAAAGAAGTTGCTGATAAAGCTCAACATTCTGCTTCAATAGTTACTCTAAAATCCAAACCTCCCAATCATTTTATATGTCCTATACTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCAGACGGATATACATACGATCGCAAAGCAATTGAAAAGTGGCTTCTAGATCACGACAAGTCACCGATGACGAATATGGCTTTACCTCATAAGTATCTAATTCCTAATTACACACTTTTATCAGCAATTTTGGAGTGGAAGACCTAA 2382 0.4131 MDRIQEGDENGKCSVVGLAIKGNKKSKYVVQWALDKFVAEGVLIFKLIHVRAVIKGVPTPMGDVLPLSQVRNDVAMAFKREIEWQTNHMILPFKSLCEQRKVHVDVVVIESDDVVTAIAEEVTKDAITKLVVGASSSGIFRSKHKGMSAKISVSTPTFCTVYAVSKGKLSIRQSDTRIDGNITDNTSEISFSSTSSSNYTSTTHTDSGSVASYAPLHPSPLATRRVKALSGVEQTLSSLDVTNHSRGQSLDLGRKNAATSSSKNSDVDHYISQASSSESISDTESRFYDQNSAMFVPQVTNPRSPNRQENINLELQKLRIELRHAQGMHAVAQSENTDASQKLNELNKRRLEESMKMKEIIAKEEMAKELANQEREKYEAAAREAEYLKQCAEREAAERKGTELKAIHAAKEKEKLEDALSGSTPQYRVFTWDEIVSATSSFSENLRIGMGAYGMVYKCTLHHTTVAVKVIHSNGIRISKQFEQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLQKNGNSQIPWFVRFRIAWEIASALSFLHSTKPQPIIHRDLKPANILLGGNLVSKIGDVGLSTILDSDNLSAMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPAIALTHIVETAIDDGNLADMLDPKAGSWPIQETLEIARLALSCAEMRRKDRPDLNDHVLPMLERLKEVADKAQHSASIVTLKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLLDHDKSPMTNMALPHKYLIPNYTLLSAILEWKT* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5243 793 ProSiteProfiles Protein kinase domain profile. 442 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5243 793 Coils Coil 308 349 - -
Psa5g5243 793 SUPERFAMILY Protein kinase-like (PK-like) 423 697 IPR011009 -
Psa5g5243 793 SMART Ubox_2 729 791 IPR003613 GO:0004842|GO:0016567
Psa5g5243 793 PANTHER OS02G0152300 PROTEIN 12 792 - -
Psa5g5243 793 Pfam U-box domain 727 792 IPR003613 GO:0004842|GO:0016567
Psa5g5243 793 Pfam Protein tyrosine and serine/threonine kinase 447 697 IPR001245 GO:0004672|GO:0006468
Psa5g5243 793 Gene3D Transferase(Phosphotransferase) domain 1 515 725 - -
Psa5g5243 793 MobiDBLite consensus disorder prediction 239 278 - -
Psa5g5243 793 CDD STK_N 15 167 - -
Psa5g5243 793 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 726 793 IPR013083 -
Psa5g5243 793 MobiDBLite consensus disorder prediction 190 212 - -
Psa5g5243 793 ProSiteProfiles U-box domain profile. 725 793 IPR003613 GO:0004842|GO:0016567
Psa5g5243 793 ProSitePatterns Protein kinases ATP-binding region signature. 448 469 IPR017441 GO:0005524
Psa5g5243 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 560 572 IPR008271 GO:0004672|GO:0006468
Psa5g5243 793 Coils Coil 361 395 - -
Psa5g5243 793 Gene3D Phosphorylase Kinase; domain 1 420 514 - -
Psa5g5243 793 SMART serkin_6 442 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5243 793 SUPERFAMILY RING/U-box 724 792 - -
Psa5g5243 793 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 12 792 - -
Psa5g5243 793 Gene3D HUPs 10 146 IPR014729 -
Psa5g5243 793 CDD RING-Ubox_WDSUB1_like 730 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5243 Psa-Chr5 460796976 460800589 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5243 15 793 U-box Gene Family AT4G25160 52.509 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Psa5g5243 PK_Tyr_Ser-Thr 1.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5243 - - gsj:114409387 1134.78