Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5241 ATGGATAGGATTAAAGAGGGGAATGAAAGTAGCCGAACTCGGCATTCGGTTGTGGCGCTAGCGATCAAGGGGACCAAGAAAAGCAAGTATGTGGTACAATGGACACTTAACAAGTTTGTGCCTGAGGGAATGATTATCTTCAAGTTGATTCATGTTCATGCTGGTATAACCGGGGTTCCTACACCAATGGGTTATGTCCCAATTTCACAAGTGCGTAATGATGTAGCGGCTGCTTACGAAAAGGAAATGGAGTGGAAGACGCATCAAATGCTTCTACCTTTTAAGAAAATGTGCGAGCAAAGAAAGGTTCATGTAGATCTTGTAGTAATTGAATCGGATGATGTGGCATCCGCCGTAGCAGAGGAAGTAACTAAGGACGCGATAACCAAGTTAGTCGTTGGAGCTTCATCCGGCGGCTTATTCAAAAGTAAACATAAGGGTATGTCAGCGAAAATTTCGGCATGTACTCCGAGATATTGTACGGTATATGCTGTTTCTAAAGGAAATTTGTCCATACGGCCGTCAGATATGCAGATTGATGAAAGCATTACAGATGACACGAGTGAAATCAGTTTTTCCTCGAGCAGTTCATCGAACTATACTTCTACCACTCAGACCGATTCTGGCTCGGTTGCATCGTATGCTGCTTTACATTCGTCTTCTTTGGCAACGCAACGATTTCAAGCTCTTTCGAGTTTGAATCAGACCCTTCTAAACACAACTCCAGGTTCGAATGAAACTAGTCACTCTAGAGGTCAGTCCATTGATCTTGGAAGAGAGAATGTTGCCACAAGTTCTGCTAGAAACTCAGATTTTGGCCGCGCTTTGAGTCGAGCCTCTAGTTACAGAAGCATTGCTTCAGATACGGAATCGTGGGTCACTGGTCAAAATTCTGTTAAGGGTTCGCCACTAGCCTCTAGACTTTCGTCACCTAATAGACAGGAAAATTTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAAGGAATGCATGCGGTAGCTCAAACCGAGAACATCGATGCATCACGCAAGCTAAGTGAGTTAAGCAAGAGGAGATCAGGAGAATCCATGAAAATGAAGGAGATTATTGCGAAGGAGGAGTTGGCTAAGGAATTAGCGAGACAAGAAATGGAGAAATACGAAGCTGCGGCAAGAGAGGCTGCGTATTTGAAAGAGTCTGCCGAAAGAGAAGCTTCAGAAAGGAAAGAAACAGAATTGAAAGCTATCCGTGCTGCCAAAGAGAAAGAAAAGCTAGAGGACGCTCTAAGCGGTTCGACACCTCAGTACCGAAAGTTTACGTGGGATGAAATAGTTTTAGCCACTTTGTCTTTCTCTGAAGACTTGAGAATCGGAATGGGTGCGTACGGAATGGTGTATAAGTGCACTTTGCATCACACAACTGTCGCTGTTAAAGTTCTCCACTCGGCCGGAATCAGCCAAAGCAAGCAATTCCAGCAGGAGTTAGAGATATTGAGCCGAATTCGTCATCCGAACTTGCTTCTTCTTCTCGGCGCATGTCCCGATCACGGATGCCTTGTGTACGAATACATGGAGAACGGTAGCTTGGAGGATAGACTATTTCAGAAAAACAGTACCACAGCAATCCCGTGGTTTGATAGGTTTCGAATCGCTTGGGAAATCGCGTCAGCTCTTTCCTTTCTTCACAGCTCAAAGCCGCAACCTATCATCCACCGCGACTTGAAACCAGCAAACATCTTGCTTGGTGGTAACCTTGTCAGCAAGATTGGCGATATCGGTCTTTCAACAATCCTCGATTCGGATGATTTATCTACGATGTATAAAGACACGGCCCCTGTTGGGACACTCAGCTACATCGATCCTGAGTATCAAAGGAGTGGTTTAATATCTACGAAATCCGACGTTTATGCTTTCGGATTAGTGATGTTACAGTTGTTGACAGCAAAACCAGCTACAGCGCTGACTCACGTGGTTGAAACAGCAATAGAAGGCGGTAACTTAACCGATATATTGGATCGAAAGGCCGGATCATGGCCATTTCAAGAAACCTTAGACTTAGCTCGATTAGCTTTGAGTTGCGCTGAGCTTCGACGTAGAGACCGACCCGATTTATTAGACCACGTGCTTCCCACGCTGGAGAAGCTGAAAGAAGTTGCTGATAAAGCTCATCATTCCGCTTCAATGGTTACTATCAAACCTAAACCTCCAAACCATTTCATCTGCCCTATACTTCAGGATGTGATGGACGATCCGTGCGTTGCTGCAGACGGATACACGTATGACCGAAAAGCGATTGAAAAATGGCTCGAAGAGAATGAGAAATCGCCAATGACAAACATGGCTTTGCCTCATAAGTTTTTAATTCCTAACTACACACTTTTATCTGCAATTTTGGAGTGGAAGTCCAAAGAAATATGA 2409 0.4442 MDRIKEGNESSRTRHSVVALAIKGTKKSKYVVQWTLNKFVPEGMIIFKLIHVHAGITGVPTPMGYVPISQVRNDVAAAYEKEMEWKTHQMLLPFKKMCEQRKVHVDLVVIESDDVASAVAEEVTKDAITKLVVGASSGGLFKSKHKGMSAKISACTPRYCTVYAVSKGNLSIRPSDMQIDESITDDTSEISFSSSSSSNYTSTTQTDSGSVASYAALHSSSLATQRFQALSSLNQTLLNTTPGSNETSHSRGQSIDLGRENVATSSARNSDFGRALSRASSYRSIASDTESWVTGQNSVKGSPLASRLSSPNRQENFNLELEKLRIELRHAQGMHAVAQTENIDASRKLSELSKRRSGESMKMKEIIAKEELAKELARQEMEKYEAAAREAAYLKESAEREASERKETELKAIRAAKEKEKLEDALSGSTPQYRKFTWDEIVLATLSFSEDLRIGMGAYGMVYKCTLHHTTVAVKVLHSAGISQSKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDRLFQKNSTTAIPWFDRFRIAWEIASALSFLHSSKPQPIIHRDLKPANILLGGNLVSKIGDIGLSTILDSDDLSTMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPATALTHVVETAIEGGNLTDILDRKAGSWPFQETLDLARLALSCAELRRRDRPDLLDHVLPTLEKLKEVADKAHHSASMVTIKPKPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLEENEKSPMTNMALPHKFLIPNYTLLSAILEWKSKEI* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5241 802 SUPERFAMILY RING/U-box 730 800 - -
Psa5g5241 802 SMART Ubox_2 735 797 IPR003613 GO:0004842|GO:0016567
Psa5g5241 802 PANTHER OS02G0152300 PROTEIN 15 798 - -
Psa5g5241 802 Gene3D Transferase(Phosphotransferase) domain 1 521 729 - -
Psa5g5241 802 SMART serkin_6 448 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5241 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 566 578 IPR008271 GO:0004672|GO:0006468
Psa5g5241 802 Gene3D HUPs 10 145 IPR014729 -
Psa5g5241 802 ProSiteProfiles Protein kinase domain profile. 448 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5241 802 Coils Coil 403 425 - -
Psa5g5241 802 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 15 798 - -
Psa5g5241 802 MobiDBLite consensus disorder prediction 292 311 - -
Psa5g5241 802 ProSitePatterns Protein kinases ATP-binding region signature. 454 475 IPR017441 GO:0005524
Psa5g5241 802 Gene3D Phosphorylase Kinase; domain 1 416 520 - -
Psa5g5241 802 SUPERFAMILY Protein kinase-like (PK-like) 430 702 IPR011009 -
Psa5g5241 802 Coils Coil 314 334 - -
Psa5g5241 802 ProSiteProfiles U-box domain profile. 731 802 IPR003613 GO:0004842|GO:0016567
Psa5g5241 802 Coils Coil 367 401 - -
Psa5g5241 802 MobiDBLite consensus disorder prediction 240 268 - -
Psa5g5241 802 Pfam Protein tyrosine and serine/threonine kinase 453 701 IPR001245 GO:0004672|GO:0006468
Psa5g5241 802 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 731 802 IPR013083 -
Psa5g5241 802 Pfam U-box domain 733 799 IPR003613 GO:0004842|GO:0016567
Psa5g5241 802 CDD STK_N 17 168 - -
Psa5g5241 802 CDD RING-Ubox_WDSUB1_like 736 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5241 Psa-Chr5 460788910 460794530 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5241 18 799 U-box Gene Family AT4G25160 52.433 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Psa5g5241 PK_Tyr_Ser-Thr 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5241 - - gsj:114409387 1157.51