Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5235 ATGGGATTTGACTCCATCAGGCGAGCTTTACATGATGGGAACAAAAAAGTTATGCTTCAAATGCGTGAATGCTATGATGCCTTGGACTTGTTGTTGTTGACTTGGACTGCTGTTGTTTGGTTGCATGGTTTGGAATTTGTTGCAAGTTTTATGTCCATTTATATGCACATGTTAGGTTGCATTGGATGCTTGGTCTTCTTGCAGGGTGCTCATGGATTGATGCTTGCTTGCTATGGCTTTTTGCAGCTTGATGGAATTGGATTGAAAGTGTGTCTGTTGCAGGTTTGTATGTTACCTGCCTTGCTTGATGTTTGTGCATGTTTTGGAATGCATTGTTGTAAATTTGGTGATGGCAATAGTGGTGAAGATTCAACTAGTTTGCCCTATGGTTGGAGTAGATATGCACAGTTTAGCTTGGCAATTGTTAATCAAATCCATAATAAGTTTCTGTGGAGAAAAGTTATTTCAACTTGCGAGTTTGTGTCCGTTGTTCTTTGTTGTCGAGTTGCTCCTCTGCAAAAAGCCGGTATTGTTTCCCTTGTGAAGAAGAGAACATCTGACATGCACATAGCCATTGGAGACAGTATGAATTCTTCTCTCGATTTCGTTTTAGTCAGTGCTAATGATGTTTCAATGATTCAAATGGCTGATGTCGGAGTCGGCATCAGTGGACAAGAGGGCAGGCAAGCTGCTGAAGCCGGGGCTTCTGCCGGTGTGGTACTAGACGGATGCTGCACAATCTGGGGTGATGAATTTTCGATGCAAATCCCAAACAATAAGGTCGGCCTTATAATTGGTAAAGGAGGAGAAACAATTAAGAGTATGCAAGCTTCTACTGGAGCACGGATTCAGGTTATCTCTTGTTCTTTGTTTTCTCTGCTTCTTTTGTTATATATTTTCAAAATCATAATTATGTTTGAAGTTGGATGGTGTTAA 936 0.4092 MGFDSIRRALHDGNKKVMLQMRECYDALDLLLLTWTAVVWLHGLEFVASFMSIYMHMLGCIGCLVFLQGAHGLMLACYGFLQLDGIGLKVCLLQVCMLPALLDVCACFGMHCCKFGDGNSGEDSTSLPYGWSRYAQFSLAIVNQIHNKFLWRKVISTCEFVSVVLCCRVAPLQKAGIVSLVKKRTSDMHIAIGDSMNSSLDFVLVSANDVSMIQMADVGVGISGQEGRQAAEAGASAGVVLDGCCTIWGDEFSMQIPNNKVGLIIGKGGETIKSMQASTGARIQVISCSLFSLLLLLYIFKIIIMFEVGWC* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5235 311 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 153 233 - -
Psa5g5235 311 Gene3D K Homology domain, type 1 250 291 IPR036612 GO:0003723
Psa5g5235 311 SMART kh_6 248 305 IPR004087 GO:0003676
Psa5g5235 311 ProSiteProfiles Type-1 KH domain profile. 249 285 - -
Psa5g5235 311 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 153 233 - -
Psa5g5235 311 CDD KH-I 251 285 - -
Psa5g5235 311 SUPERFAMILY HAD-like 148 240 IPR036412 -
Psa5g5235 311 Gene3D - 119 242 IPR023214 -
Psa5g5235 311 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 253 288 IPR036612 GO:0003723
Psa5g5235 311 Pfam KH domain 253 286 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5235 Psa-Chr5 460682172 460685016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5235 162 234 Primary Pumps ATPases AT5G04930 69.863 8.68e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5235 K14802 - zju:107406555 85.1149