Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5220 ATGGAACTGAAGGCAAATCATACATCTCTCCTTGCTGAAACTGCAACGTTAACGAGGACAAGGTCAAGGCTCGGCACGCCTTCGACTCTGTCTTGCTCTCCTACAGGTGGTTCCACTTTTCTCCATGGTCCGTCCCTAACTATTCCGAGGAAGAAGAATGGAGTTCTTGACGATGTTCGTTCTAATGGTTGGCTCGACGCGATGAGATCATCTTCTCCTACTCACAAGAAAATATCTATGGATGTTGGTCACGGTGTCGCGTCTTCGGAAGCCGATGCTGCTTATTTAACCTGGCTGCTAGAGTTTCCATCCGCACTTTCGTCTTTTGAGCAAATTACTAACTGTGCTAAAGGGAAGAAAATAGCATTGTTTCTCGATTATGATGGGACTCTTTCGCCGATCGTTGACAATCCAGACCGAGCTTACATGTCCGATAAGATGCGTGCCGCTGTTAAAAGCGTGGCAGAGTATTTTCCAACCGCAATAATTAGTGGAAGAAGTCGTGAAAAGGTACATGAATTTGTTGGCTTGACAGAACTCCATTATGCTGGTAGTCATGGAATGGACATTATCGGTCCTCTTAGAGAATCGGTATCTGATAATCACCCTAATTGCATTAGATCCACTGATAAGAAAGGTAAGGAAGTTAATTTATTCCAACCTGCTGCTCATTTCCTGCCTATGATTGATGAGGTAAGGATGTTGCTCGTTGAGTGTATAAGAGACATCAAAGGAGCGAAAATTGAGAATAATAAGTTTTGTGTCTCTGTACATTATCGTAATGTGGACGAAGAGAATTGGGATTTGGTGGCACAACGTGTTTATGATATTATGAAAGACTATCCACATTTACGATTAACTCACGGTCGGAAGGTCTTAGAGGTTCGACCGGTGATTGACTGGGACAAGGGAAAAGCTGTTACGTTTTTGCTAGAGTCACTTGGACTTAACGATGATGACGATGTTCTAGCTATATATATCGGGGATGATCGGACAGATGAAGATGCATTTAAGGTTTTGAGTGAGGTTAACAAAGGTTTCGGAATCTTAGTTTCTTCTGCGCCTAAAGAAAGCAATGCGGTTTACTCTCTTTGTGATCCTTCTGAGGTGATGGAATTTCTCAAGTCACTTGTGGCATGGAAATCAAACTCTTTAGAATAA 1161 0.4255 MELKANHTSLLAETATLTRTRSRLGTPSTLSCSPTGGSTFLHGPSLTIPRKKNGVLDDVRSNGWLDAMRSSSPTHKKISMDVGHGVASSEADAAYLTWLLEFPSALSSFEQITNCAKGKKIALFLDYDGTLSPIVDNPDRAYMSDKMRAAVKSVAEYFPTAIISGRSREKVHEFVGLTELHYAGSHGMDIIGPLRESVSDNHPNCIRSTDKKGKEVNLFQPAAHFLPMIDEVRMLLVECIRDIKGAKIENNKFCVSVHYRNVDEENWDLVAQRVYDIMKDYPHLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLNDDDDVLAIYIGDDRTDEDAFKVLSEVNKGFGILVSSAPKESNAVYSLCDPSEVMEFLKSLVAWKSNSLE* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5220 386 Gene3D - 223 386 IPR023214 -
Psa5g5220 386 Gene3D - 121 219 IPR023214 -
Psa5g5220 386 SUPERFAMILY HAD-like 122 380 IPR036412 -
Psa5g5220 386 CDD HAD_TPP 122 372 - -
Psa5g5220 386 Pfam Trehalose-phosphatase 124 367 IPR003337 GO:0003824|GO:0005992
Psa5g5220 386 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 IPR044651 GO:0004805|GO:0005992
Psa5g5220 386 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 - -
Psa5g5220 386 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 340 IPR006379 -
Psa5g5220 386 TIGRFAM T6PP: trehalose-phosphatase 118 378 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5220 Psa-Chr5 459378528 459383712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5220 119 384 Trehalose Biosynthesis Gene Families AT1G23870 26.316 1.09e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5220 K01087 - gmx:100819495 579.326