Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5214 ATGGAAATCTTTGGAAAAACATTCTTCATACTCTTATTATTTTGTTCTATTTTCTCAATAGTCTCATCAAGAAAAGAACCTTCCTCAAACAACATAGATTGGTGGTGTAACCAAACACCTCATCCTCAACCATGCAAACACTACGCAACTCAAATGAACAATCATTTCAAAATCAAACATAGAGTTGAGTTCAGAAGAATGCTTGTTCAACTAGCATTAGAACAATCTCTTATCATGCAAAAAGAATCGCAACAAAACTCGTCGGTGGAGCATAAAAATGTTCATGGTGATTGTTCGAAGCTGTTCGAAAACACGATATTTCATCTCAATCGGACACTTGAAGGATTAAACGACGCAAACAAAATATGTTCGGCGAATGATGCACAAACATGGCTCACAACTTCTCTCACAAACATTGAAACATGTAAAAACGGAGCTTTAGAACTCAATGCTCATCAAGATTTCAATTTCATTCTACAAAACAATGTCATTGAGATGATAAGGAACACCTTAGCCATCAATATGTATTTCTTGAGACACAAGAAAGAAACCGGAGAAGGGTCGTTTCCAAGTTGGTTTTCGAAGCATGAGAGGAACCTTTTGCAATCAACTTCTTCACTTAAGTTCAATCTTGTGGTGGCAAAAGATGGTTCTGGACATTTTAAGACAGTGCAAGCTGCTTTGGATACTGCAGCTAAGAGAAAGTATAAGACAAGGTTTGTGATACATGTGAAGAAAGGTGTTTATAGAGAAAACATTGAGGTTGATGTTCATAATGATAACATTATGTTGGTTGGTGATGGAATGCAAAATACCATAATAACAAGTTCTAGAAGTGTTCAAGGAGGTTTTACTACTTATAGCTCAGCAACAGCCGGTATTGATGGACTTCACTTCATTGCACGTGATATAACATTTCAAAATACTGCTGGTCCACACAAGGGTCAAGCAGTGGCGCTACGATCGGCCTCGGATCTATCTGTCTTCTATCGATGTGCTATATCAGGTTACCAAGACACTCTCATGACTCATGCGCAACGTCAATTTTATCGACAATGTTATATCTACGGCACCGTAGACTTCATCTTTGGCAACGCCGCGGTGGTATTCCAAAATTGTAATATTTTTGTAAGAAAGCCATTAGATGGTCAAGCCAACATGATCACGGCCCAAGGTCGAGGCGACCCATTTCAAAACACTGGAATTTCGTTCCACAATTGTCAAATTAGGGCTGCCTCGGACCTAAAGCCCGTTGTCGACAAATATAAAACCTACTTGGGCCGGCCTTGGCAACAATACTCAAGAGTTATGGTGATGAAAACTTTTATGGACACTTTAGTGAGCCCATTGGGTTGGTCTCCATGGGGTGACACTGATTTTGCTCAAGATACTTTGTATTATGGAGAATACGAAAATTACGGGCCAGGCTCATCGACAAAAGACAGAGTGAAATGGCCCGGTTATCATGTGATTACAAGCCCAAATGAAGCATCAAAGTTTACTGTAACTGGGCTTCTTGCAGGCCCATCATGGTTGGCTGCTACTACTGTGCCATTTACATCTGGTCTTTGA 1572 0.3989 MEIFGKTFFILLLFCSIFSIVSSRKEPSSNNIDWWCNQTPHPQPCKHYATQMNNHFKIKHRVEFRRMLVQLALEQSLIMQKESQQNSSVEHKNVHGDCSKLFENTIFHLNRTLEGLNDANKICSANDAQTWLTTSLTNIETCKNGALELNAHQDFNFILQNNVIEMIRNTLAINMYFLRHKKETGEGSFPSWFSKHERNLLQSTSSLKFNLVVAKDGSGHFKTVQAALDTAAKRKYKTRFVIHVKKGVYRENIEVDVHNDNIMLVGDGMQNTIITSSRSVQGGFTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAISGYQDTLMTHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFVRKPLDGQANMITAQGRGDPFQNTGISFHNCQIRAASDLKPVVDKYKTYLGRPWQQYSRVMVMKTFMDTLVSPLGWSPWGDTDFAQDTLYYGEYENYGPGSSTKDRVKWPGYHVITSPNEASKFTVTGLLAGPSWLAATTVPFTSGL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5214 523 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 174 IPR035513 -
Psa5g5214 523 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 177 IPR035513 -
Psa5g5214 523 Pfam Pectinesterase 210 508 IPR000070 GO:0030599|GO:0042545
Psa5g5214 523 PANTHER PECTINESTERASE 1 522 - -
Psa5g5214 523 SUPERFAMILY Pectin lyase-like 206 522 IPR011050 -
Psa5g5214 523 SMART PMEI_2 27 173 IPR006501 GO:0004857
Psa5g5214 523 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 174 IPR006501 GO:0004857
Psa5g5214 523 Pfam Plant invertase/pectin methylesterase inhibitor 31 173 IPR006501 GO:0004857
Psa5g5214 523 Gene3D - 204 523 IPR012334 -
Psa5g5214 523 PANTHER PECTINESTERASE 1 522 - -
Psa5g5214 523 ProSitePatterns Pectinesterase signature 2. 355 364 IPR033131 -
Psa5g5214 523 CDD PMEI-like_3 34 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5214 Psa-Chr5 459149047 459151144 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5214 29 523 Carbohydrate Esterase AT3G47400 56.809 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5214 K01051 - gmx:100806133 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5214 5 459149047 459151144 Psa5g5214 5 459149047 459151144 ECH