Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5205 AAGGGTACAATCGCCCTAGCCACCTACCTCAGAACCTACCACATCGGCGATTATGTTGATATCAGGGTTAACGGCGCCGTTCACAAAGGTATGCCTCACAAGTTCTACCATGGACGTACCGGCCGTGTCTGGAATGTCACCAAACGTGCCATTGGCGTTGAGGTTAACAAACAGGTTAGGAATAAGATTCTGAGGAAGAGGATTCATGTTCGTGTGGAGCATGTTATGCCTTCTAGGTGCACTGAGGAGTTTCGTTTGAGGAAGATCAACAATGATAAACTCAAGGCAGAGGCTAAGGCAAAGGGTGAGGTTATTAGCACAAAGCGCAAACCTGAGGGGCCTAAACCTGGTTTCAAGGTTGAAGGAGCTACTTTGGAAACTGTTACTCCTATTCCTTATGATGTGGTTAATGATTTAATAGGAGGATACTAG 432 0.4606 KGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKINNDKLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLIGGY* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5205 143 ProSitePatterns Ribosomal protein L21e signature. 16 41 IPR018259 GO:0003735|GO:0005840|GO:0006412
Psa5g5205 143 Gene3D - 78 135 - -
Psa5g5205 143 Pfam Ribosomal protein L21e 1 80 IPR001147 GO:0003735|GO:0005840|GO:0006412
Psa5g5205 143 SUPERFAMILY Translation proteins SH3-like domain 1 78 IPR008991 -
Psa5g5205 143 Gene3D Ribosomal protein L21 1 76 IPR036948 GO:0003735|GO:0005840|GO:0006412
Psa5g5205 143 PANTHER 60S RIBOSOMAL PROTEIN L21 1 143 IPR001147 GO:0003735|GO:0005840|GO:0006412
Psa5g5205 143 PANTHER 60S RIBOSOMAL PROTEIN L21-1 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5205 Psa-Chr5 458358934 458359497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5205 1 143 Cytoplasmic Ribosomal Protein Gene Family AT1G57860 79.021 2.00e-84 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5205 K02889 - gmx:100305629 272.707