Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5203 ATGGCTCTGAAGTTTATAGCTATTTCGGCGGTTTCGACAGTGTTAAGTTTTGTAGGTCTTCAGTTTTGCACAGATTTGTCATTAGATAAACTTAAATCAGATGGACTAGTTGGATGGAATTCAATTCACTTGGATAATGTCGACCAGGACGCCGAGTTACCTTTGGGTTTGTATACCACCATAGGGTTGTTTACGAATTGCTTGGTCAATGTATTTGTCCTTCTCAATCTTTGTCTCAAGGCTATGTTTTTCGCAGAGTTGTATCCGTCTGAATCTCGTAAATTGGTTGAACGTCTCGTGAATTATGTCATTTACAAGGGGGCATTTCTTCCGTTGATTGTGCCACCGACACTTTATCAGGCAGGTCTTTGGACAGCTTGGTTGGCCGTGCTTTGTTCTTTAAAGATGTTTCAAGCTCTGGCTAGAGATCGATTGGAGCGGCTGAATGCATCACCATCCGCCACACCATGGACATATCTTCGTGTATATTCAGCATTGTTATTTATTTTCTTGGTTGATGTTCTCTGGATAAGGCTTTGTCTTGCAATATATACAACACATGGGTCCTCTATGTTTCTGTTACTATTCTTTGAGCCTTTAAGTGTTGCTTTCGAAACCCTACAGGCCATTTTGGTACATGGATTTCAGTTGCTTGACATATGGATTCATCATTCGGCTTGCAGTAGTAGTGATTTCCGAACACCTAAACTGCTTGACACATTAACTGCAGGTTCTTTACTGGAATGGAAGGGAGTTCTTATCCGGAACTTGGGATTTTTCCTTGACATGGCAACATTTTTCATGGCACTTGGTCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTTGTAGACGCAGTGCTATTTTTAAATATACGTGCGTTGCTTAGTGCAATAATAAATCGCGTAAAAGGATTTATTAGGCTAAGGATAGCTCTAGGATCACTTCATGCAGCTCTTCCCGATGCAACCGCCGAGGAGCTAAGAGCATATGACGATGAATGTGCTATTTGTAGAGAAGCCATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACCGAGATGTATACTTGTCCAACATGCCGAAAGCCGCTTTTTGGAGGCCGACCTGAAAACGAAACGAATTCAAGTACAGGGGTTATATCTAGTGACGAGCAACTTGCGCGCCAAATAAGTGCAGGATTTGATCGTCAAAACTCTGCTAGACATAACATGCCTGCAGGATTGTTTCCAAATCAGACACATAACAACGCCGAAGGCGTTCCTTGGAGGGGTGCAGGAATGGAATCAGGGTGGTTACATTCTTGGCCGAATCCGGGTGTTGATGGAGCTGGTCCATCTACTGCTATCAGAACAGTAGGTCTCGGAAGAGTTCAAATGATGATGAGACATCTTGCATCAGTCGGAGAAACCTATGCTCAAACCACCTTTGATGATTCTTCTTGGAACCTTTGGCCTATAAATCCGTCTCAAGCTTCTGCGAGTGCTTCAACTTCGACGACCATTCCTCCCCCTGGTGTAAGATTGCCAGGAGGAAATGGTGGTTTACATATAAGGACCAATTCACGATCTGCAAATGACAATGTAGCAAATGTACTTGCTATGGCCGAGACAGTCCGGGAGGTTCTACCTCATATTCCAGATGACATGATATTCCAGGACTTGCAGCGGACGAATTCTGTGACAGTTACTGTGAATAATCTTCTCCAAATGTGA 1770 0.4333 MALKFIAISAVSTVLSFVGLQFCTDLSLDKLKSDGLVGWNSIHLDNVDQDAELPLGLYTTIGLFTNCLVNVFVLLNLCLKAMFFAELYPSESRKLVERLVNYVIYKGAFLPLIVPPTLYQAGLWTAWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFIFLVDVLWIRLCLAIYTTHGSSMFLLLFFEPLSVAFETLQAILVHGFQLLDIWIHHSACSSSDFRTPKLLDTLTAGSLLEWKGVLIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIINRVKGFIRLRIALGSLHAALPDATAEELRAYDDECAICREAMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFGGRPENETNSSTGVISSDEQLARQISAGFDRQNSARHNMPAGLFPNQTHNNAEGVPWRGAGMESGWLHSWPNPGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTTFDDSSWNLWPINPSQASASASTSTTIPPPGVRLPGGNGGLHIRTNSRSANDNVANVLAMAETVREVLPHIPDDMIFQDLQRTNSVTVTVNNLLQM* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5203 589 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 589 - -
Psa5g5203 589 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Psa5g5203 589 ProSiteProfiles CUE domain profile. 549 589 IPR003892 GO:0043130
Psa5g5203 589 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 589 - -
Psa5g5203 589 Gene3D - 548 588 - -
Psa5g5203 589 SUPERFAMILY RING/U-box 326 384 - -
Psa5g5203 589 Pfam Ring finger domain 336 380 IPR001841 -
Psa5g5203 589 CDD CUE_RIN3_plant 550 587 IPR035667 -
Psa5g5203 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 386 IPR013083 -
Psa5g5203 589 SMART ring_2 338 379 IPR001841 -
Psa5g5203 589 Pfam CUE domain 553 589 IPR003892 GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5203 Psa-Chr5 458255409 458261111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5203 69 397 C3H Transcription Factor Family AT3G16090 29.014 2.22e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5203 K10636 - gmx:100820578 1012.29