Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5202 ATGAGTACAGAAACTCAAACAGTAGTGGTGATCCAAGATGCATCAAGAGATGTTGGTTTAAAGGCAATAGAAAAGGTCCTCAAAAAGCTAGCAGTTAAAGCTGGAGATCAGCTTATAATTGTTGCTATCCTTAACTGGTTTAGCAGTCCTATGGGCTACATGGTCACAGTTGATTCAAGTTATTTTATTTCCACAAACAAGAAAATTATTGAAGAAAACTTTAGCAAGAGAAAGAATGATTATCCGATGAATCGGTATATCAACAAGCTCTCTAAGTACTGTCAAATCAATAAGATTGAATTCCAACTAGAAGTGCATGCAGGACCAGCTCCTCAGGTTATTTCTGAGGCTGCAACTAAATTTCAACCTACAATTTTGATACTTGATAGGTATATCCACAGGAACATGAAGAATTTCATGGATAGGATCCCTTGTGGTATGTATAGGATAACAAGTGATAACTCCATTGAAAAGCTGAAAGATCCAAAATCAATGGCTTCCAAATTTTCTGAAAGGCAAGAAAATGTAAGCTATTCAGAAATGATACCGGGAAGTGAAGATGACGGAGTCTCTCTTCAGATGTCGAAGTCTTCGTCTACTGATCTTTTCACGTCCGGAGTTTCAAGTACCGATGCATCTACTTCTGGCGTCGGATGTTCAGAATATGTCCTTCAAAAATACCAACCGGGAGAGTTTTTTCCAGAACAAGAAAAACAAGAGAGACAGTCACTATTTCATATTAGCGAAAATCAAGAATCGAACCAAACTGAAGTAAATCAAAAGGAGATACAAATTGAGAATGATATGGAAGAAGACTTTACAAATCCAGCTTGTTCTGTGTGCAACAATAAAAGACTGAAAATTGGATCGAAACGAGACTTCAGTTACTTGGAGCTCTACGCTGCTACGCAGGGGTTTTCTGCTAAGAACTTTCTGTCAGAAGGTGGGTTTGGATCAGTCTACAAAGGACAACTAAACGGAATGATAGTTGCGGTTAAGCAACATAAAAGTGCAAGCTTCCAAGGAGAGAAAGAGTTTAGGTCTGAAGTCAATGTACTTAGAAGAGCAAGACATGAAAATGTGGTTATGCTTTTAGGTTCATGTTCGGAAGGGAATAATAGGCTTCTTGTTTATGAATATGTATGCAATGGCTCACTCGATCAACATCTTTCCGAACACTCGAGATCACCACTAACTTGGGAAGATAGGATCAAAGTAGCTATCGGAGCTGCCAGAGGCTTACTATACTTGCACAAAAATAACATCATACACAGAGATGTCAGACCAAACAATATCCTTGTAACACATGATAATCAACCATTGATAGGAGATTTTGGACTAGCAAGAACTCACAACAAAGATTTGACACACTCAACGGAAGTTGTTGGTACCTGGGGGTATTTGGCACCAGAATATGCAGAATATGGCAAAGTGTCAAGTAGAACAGATGTATATTCTTTTGGAGTGGTTCTACTACAGCTTATCACTGGAATGAGAACAACAGACAAAAGACTTGGAGGAAGAAGCCTCGTTGGTTGGGCAAGGCCACTTTTAAGAGAAAGAAATTATCCAGATCTAATTGATGAAAGGATCATTGATACACATGATTACCATCAATTATTTTGGATGATACGACTAGCTGAGAAATGTCTAAGCAAGGACCCTAAGAAAAGACTAAGCATGGTTGCGGTTGTTAATGCTTTGAGTGATATTTCGGAAGGAAACACATGTGACATTGGAACAGGAGATTACTCTCCTGCAAGGTCAGATTCATCTTATAGTGAATCAGAATTTGATGAAAATGAAGAGGAGGAAAGAGAGTTACTAAGCACGATTTCAGAATCCATAGAAGGAAATGATAACATTAGTCAGATGAGACATATGAGACTGAGGCAGCCACCATCTCCTCCAATTAAAAGCATGTGCTCAAGTGGCTCAAACTCATTTCAGTTTTCTGATGAATCAAATAGTGATCATGAAGCACATAATGAAAGGGATACAGAAATGCCAACATACAAAATTGGCTTACTCAACCACTCTTAG 2043 0.3847 MSTETQTVVVIQDASRDVGLKAIEKVLKKLAVKAGDQLIIVAILNWFSSPMGYMVTVDSSYFISTNKKIIEENFSKRKNDYPMNRYINKLSKYCQINKIEFQLEVHAGPAPQVISEAATKFQPTILILDRYIHRNMKNFMDRIPCGMYRITSDNSIEKLKDPKSMASKFSERQENVSYSEMIPGSEDDGVSLQMSKSSSTDLFTSGVSSTDASTSGVGCSEYVLQKYQPGEFFPEQEKQERQSLFHISENQESNQTEVNQKEIQIENDMEEDFTNPACSVCNNKRLKIGSKRDFSYLELYAATQGFSAKNFLSEGGFGSVYKGQLNGMIVAVKQHKSASFQGEKEFRSEVNVLRRARHENVVMLLGSCSEGNNRLLVYEYVCNGSLDQHLSEHSRSPLTWEDRIKVAIGAARGLLYLHKNNIIHRDVRPNNILVTHDNQPLIGDFGLARTHNKDLTHSTEVVGTWGYLAPEYAEYGKVSSRTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLRERNYPDLIDERIIDTHDYHQLFWMIRLAEKCLSKDPKKRLSMVAVVNALSDISEGNTCDIGTGDYSPARSDSSYSESEFDENEEEERELLSTISESIEGNDNISQMRHMRLRQPPSPPIKSMCSSGSNSFQFSDESNSDHEAHNERDTEMPTYKIGLLNHS* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5202 680 MobiDBLite consensus disorder prediction 637 654 - -
Psa5g5202 680 Gene3D Transferase(Phosphotransferase) domain 1 381 581 - -
Psa5g5202 680 PANTHER OS01G0253100 PROTEIN 22 597 IPR045271 GO:0004714|GO:0006468
Psa5g5202 680 ProSiteProfiles Protein kinase domain profile. 306 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5202 680 MobiDBLite consensus disorder prediction 633 680 - -
Psa5g5202 680 Pfam Protein tyrosine and serine/threonine kinase 309 568 IPR001245 GO:0004672|GO:0006468
Psa5g5202 680 SMART tyrkin_6 306 568 IPR020635 GO:0004713|GO:0006468
Psa5g5202 680 PANTHER TYROSINE KINASE FAMILY PROTEIN 22 597 - -
Psa5g5202 680 SUPERFAMILY Protein kinase-like (PK-like) 289 568 IPR011009 -
Psa5g5202 680 MobiDBLite consensus disorder prediction 579 607 - -
Psa5g5202 680 ProSitePatterns Tyrosine protein kinases specific active-site signature. 422 434 IPR008266 GO:0004672|GO:0006468
Psa5g5202 680 CDD STKc_IRAK 312 571 - -
Psa5g5202 680 Gene3D Phosphorylase Kinase; domain 1 278 380 - -
Psa5g5202 680 MobiDBLite consensus disorder prediction 655 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5202 Psa-Chr5 458194025 458198410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5202 294 615 Trihelix Transcription Factor Family AT1G70460 44.144 3.43e-80 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Psa5g5202 PK_Tyr_Ser-Thr 6.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5202 - - gmx:100794450 877.47