Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5198 ATGGCAGTCATAGGCAACTATTCTGTCATGAAACTTTGTTGTTCATCAAACCGTGCAATAACCTTAATACAAAAGGTTATTGCAGAAGTTATCGGTACATACTTTCTTGTATTTGCAGGGTGCGGTGTTGTAGCAGTGGACAAAATCTATGGCTCCATAACATTTCCAGGGATATGTATCACTTGGGGTTTGATTGTAACCGTTATGTGTTATTCTGTTGGCCATATCTCCGGAGGACTCTTCAACCCCGCGGTGACGGTAACTTGGGCCATCTTTCGCCGAATCAAAATCATCGAAGCTCCACTTTACATTGCTGCTGAGTTACTCGGTTCAACACTTGCGAGTTTAACATTATCTTTAATGTTTGATATTACACCAAAATCTTATTTCGGAACTGTGCCGGTTGGATCAAGCGGCCAATCTTTAGCTGTGGAATTCATTATCAGTTTTCTGTTAATGTTTGTTATTTCAGCTGTTACAACAGATGATAGAGCGGTGGATGATTCAGCGAGTATTGCGGTTGGAATGACGATAACGTTGAATCTTTTTATAGCTGGACCTGTTTCAGGTGCATCTATGAATCCAGCAAGAAGTATTGGACCTGCAATTGTGGTGCATATTTATAAAGGTTTATGGATATATGTAGTTGGTCCTATTCTTGGAGCCATAGCTGGAGCACTTGTGTATAACTTTCTTAGATCTGTATACAAACCAAGGGCAGAAAAAACAGCTGAAACGCCGGCTTCAGAAATAACAACAGAAAAGCCAAATTCAGATTTAACAGCAAAAGAACCATTGAGGAGCATAAATATAGGTTGA 819 0.3993 MAVIGNYSVMKLCCSSNRAITLIQKVIAEVIGTYFLVFAGCGVVAVDKIYGSITFPGICITWGLIVTVMCYSVGHISGGLFNPAVTVTWAIFRRIKIIEAPLYIAAELLGSTLASLTLSLMFDITPKSYFGTVPVGSSGQSLAVEFIISFLLMFVISAVTTDDRAVDDSASIAVGMTITLNLFIAGPVSGASMNPARSIGPAIVVHIYKGLWIYVVGPILGAIAGALVYNFLRSVYKPRAEKTAETPASEITTEKPNSDLTAKEPLRSINIG* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5198 272 CDD MIP 24 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5198 272 TIGRFAM MIP: MIP family channel proteins 28 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5198 272 PANTHER AQUAPORIN NIP4-1-RELATED 10 242 - -
Psa5g5198 272 SUPERFAMILY Aquaporin-like 20 239 IPR023271 -
Psa5g5198 272 PRINTS Major intrinsic protein family signature 24 43 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5198 272 PRINTS Major intrinsic protein family signature 62 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5198 272 PRINTS Major intrinsic protein family signature 99 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5198 272 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5198 272 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5198 272 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5198 272 MobiDBLite consensus disorder prediction 243 272 - -
Psa5g5198 272 PANTHER AQUAPORIN NIP2-1 10 242 IPR034294 -
Psa5g5198 272 Pfam Major intrinsic protein 19 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g5198 272 Gene3D Glycerol uptake facilitator protein. 6 246 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5198 Psa-Chr5 457912786 457914222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5198 14 259 Major Intrinsic Protein MIP AT5G37820 62.348 1.29e-107 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5198 K09874 - gmx:100791338 341.658