Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5175 ATGGATATAGATCTCAGGTTACCCTCTGGTGAACATGATAAAGAGGAAGAAGAGACAACGACACTTGATAACATGTTGGATGGTGATGAAAAGTTGCACAATGGAGGTATAGACGGCAGACATATTGTTGATGCTGGCATTGAAGTACATGCTCTAAATGGCGGAGATTTGAATTCCCCCACAGTTGATATGGTAATGTTTAAGGAAGATTCAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCCCATGGGGAAGCATATTCTTTCTACCAAGAATATGCTCGGTCAATGGGATTCAACACTGCAATACAAAATAGTCGCCGTTCAAAAACGTCAAGAGAATTTATAGATGCAAAGTTTGCTTGTTCCAGATATGGAACAAAACGAGAGTATGACAAATCCTTCAATCGACCACGAGCACGACAGAACAAGCAAGAATCTGAAAATTCAACTGGTCGAAGATCTTGTTCTAAAACCGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCAGATGGGAAATGGGTTATACATAGTTTTGTAAAGGAGCATAATCACGAGCTCTTACCAGCCCAGGCAGTAAGTGAACAAACACGAAGAATGTATGCTGTGATGGCCAGGCAATTTGCAGAATACAAAACTGTGGTTGATGAAAGTGCCACAACTTTTTCTTGGCTATTACGGACATGGCTGAAAGGTGTTGGTGGTCAAGTTCCAAAAGTGATAATTACTGACCATGACATGACTTTGAAGTCAGTTATTTCAGATATTTTTCCTAGTGCTTGCCATTGTGTTTGCTTATGGCATATAATGGGGAAGGTATCTGAAAATTTAGCTCCTGTAATTAAAAAACATGAGAATTTTATGGCAAAATTTGAAAAGTGCGTATTTAGGTCACTGACAAGTGATGATTTTGACAATAGATGGGAGAAAATTTTGGATAGATTTGAGCTTCGACAAGACGAATGCATGCTGTCTTTGTACGAAGATCGCAAGTTATGGGCACCAACATTCATGAAAGATGTGTTCTTAGGGGCTATGTCTACTGTCCAACGATCTGAAAGTGTAAATTCATTTTTTGACAAATATGTTCATCGGAAGACCTATGTGCAAGATTTTGTTAAACAGTATGAATCCATCTTGCAAGACAGGTACGAAGAGGAAGCAAAAGCAGATTCTGATACTTGGAATAAAGCGGTAACATTAAAAACTCCCTCACCTTTAGAAAAGAGCGTTTCAGGGGTTTGCACCCATACAGTATTCAAAAAGATTCAAGCGGAGATTATTGGTGCAGTGGCTTGTCATCCTAAAGTTGACAGGCAGGATGAGACAACTGTTGTTCATAGGGTGCATGATATGGAAAGCAACAAAGACTTTTTTGTTGTGGTGAATGAAGTAAAGTTAGAGCTGTCTTGTATATGCCGACTATTTGAATATAAAGGTTATCTTTGTCGACATGCATTGGTAGTTCTTCAATATTCTGGCCATTCAGTGTTCCCCAATCAATATATTTTGAGCCGGTGGGCAAAAGATGCAAAGACCAGGAATGTAATGGACGAAGAATCTGAACTTATGCTGGCTAGGGTTCAACGATACAATGATTTATGTCATCGATCACTAAAACTGAGTGAAGAGGGATCATTGTCTCAAGATAGTTATAGTATTGCATTCCACGCGCTAAATGAGGCACACAAAAGTTGTGTTAGTGTTAACAATATTAATAAGAGTCCTACAGAAGCTGGTACATCAGGGGCTCATGGTCAGCTTTCCATTGAAGAAGACACCCAAAGTAGAAATATGGGAAAGTCAAACAAAAAGAAGAATCCAACCAAAAAGAAAAAGGTGAACTCTGAAGCAGAGGTGATGACTGTCGGGGCACTAGACAACTTGCAACAAATGGACAAATTCAACACCAGAGCTGCAGTAACCCTTGAAGGTTATTATGGCACACAACAGAGCGTGCAGGGAATGTTGAACTTAATGGGACCAACACGTGAAGATTACTACGGGAATCAACAGACTCTTCAAGGACTGGGACCAATAAATTCCATACCAACCAGCCACGATGGTTATTATGGTGCACATCAAGGCATGCCCGGTTTGGCACAACTGGATTTTTTGCGAACTAGTTTCACATATAATATGAGGGATGATCCTAATGTGAGAGCAGCACAGTTACACGAGGATCCATCAAGACACTCGTGA 2208 0.3999 MDIDLRLPSGEHDKEEEETTTLDNMLDGDEKLHNGGIDGRHIVDAGIEVHALNGGDLNSPTVDMVMFKEDSNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQESENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAVMARQFAEYKTVVDESATTFSWLLRTWLKGVGGQVPKVIITDHDMTLKSVISDIFPSACHCVCLWHIMGKVSENLAPVIKKHENFMAKFEKCVFRSLTSDDFDNRWEKILDRFELRQDECMLSLYEDRKLWAPTFMKDVFLGAMSTVQRSESVNSFFDKYVHRKTYVQDFVKQYESILQDRYEEEAKADSDTWNKAVTLKTPSPLEKSVSGVCTHTVFKKIQAEIIGAVACHPKVDRQDETTVVHRVHDMESNKDFFVVVNEVKLELSCICRLFEYKGYLCRHALVVLQYSGHSVFPNQYILSRWAKDAKTRNVMDEESELMLARVQRYNDLCHRSLKLSEEGSLSQDSYSIAFHALNEAHKSCVSVNNINKSPTEAGTSGAHGQLSIEEDTQSRNMGKSNKKKNPTKKKKVNSEAEVMTVGALDNLQQMDKFNTRAAVTLEGYYGTQQSVQGMLNLMGPTREDYYGNQQTLQGLGPINSIPTSHDGYYGAHQGMPGLAQLDFLRTSFTYNMRDDPNVRAAQLHEDPSRHS* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5175 735 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 216 670 IPR031052 GO:0006355
Psa5g5175 735 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 217 IPR031052 GO:0006355
Psa5g5175 735 MobiDBLite consensus disorder prediction 1 20 - -
Psa5g5175 735 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 216 670 - -
Psa5g5175 735 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 47 217 - -
Psa5g5175 735 Pfam MULE transposase domain 216 272 IPR018289 -
Psa5g5175 735 MobiDBLite consensus disorder prediction 579 618 - -
Psa5g5175 735 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Psa5g5175 735 SMART 26again6 471 498 IPR006564 GO:0008270
Psa5g5175 735 MobiDBLite consensus disorder prediction 579 598 - -
Psa5g5175 735 MobiDBLite consensus disorder prediction 133 164 - -
Psa5g5175 735 Pfam SWIM zinc finger 462 494 IPR007527 GO:0008270
Psa5g5175 735 ProSiteProfiles Zinc finger SWIM-type profile. 460 496 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5175 Psa-Chr5 451723254 451726917 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Psa5g5175 FAR1 2.2e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5175 - - cam:101505784 956.436