Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5172 ATGTCTCATTCTCATAATCAAACAGTTGAAGAACTTTCAGAGAAATCCATTTGCTCAATGTGCTACAACAATAGACCAAAGCTTGATTGGACAATAAGAGACTTCACATATGCTGAGTTGCATGCAGCCACACAAGGTTTTTCCATAAAGAACTTTCTGTCAGAAGGTGGATTTGGTTCTGTCTACAAAGGAGAGATTCATGGACAGAAGATTGCGGTTAAGCAATGCATTCATGCGAATCGCAAACAAGAGAAGGAGTTTAAGTCCGAAGTCGATGCGCTAACAAAAGCAAGACATGAGAATGTTGTCATGTTTCTTGGATCTTGTTCCGAAGGAAACAATAGGTTTCTTGTTTACGAATTTGTCTGCAATGGTTCACTCGATCAACATTTATCACAATATTCTCGAAAACCTCTTTGTTGGCAAGATAGGGTGAAAGTTGCTAATGGAGCTGCCAAAGGATTGTTATACCTTCATCAGAATAACATCATTCATAGAGATATAAAACCAAACAACATTCTTCTTACACATGATTGTGAAGCTTTGCTAGGTGATTTTGGTTTGGCTAAAACTGTAAGTGAAGAATTCTCATGTTCAATAGAATGTCCTGGAAATTTGGCATATTGGGCACCAGAATATGCAGCATTTGGTAAAGTATCAAATAAAACAGATGTGTATTCCTTTGGAGTTGTTCTAGTTGAACTAATAACTGGAATGAAGACTACAGACAAAAGACTTGGTGGAAAGAATCTAGTGGGATGGGCTAGACCATTACTAAGACAAGGGAACTGTCAAAAACTTGTTGATGGAAGGATAATGGAATCACATGACTGTCATCAACTTTTCTGGTTGAGTCGTTTAGCCGGAAATTGTTTAAACAAAGATCCTCACAAACGATTGGATATGAACACAGTGGTCAAAGCCTTAACACATATAGAAGAAGGTTGCAGTGGCTGCATAGTGGGAAAAGACAGTATTGATATGTCAAAAGATGATATGCAGGATTCTTCAGAATCAGATGGTGAAAGTGGAAATATTGAAAGTAGTTCCATCACTGCAAATTGCAAAAACCTCAAATTATGA 1083 0.3749 MSHSHNQTVEELSEKSICSMCYNNRPKLDWTIRDFTYAELHAATQGFSIKNFLSEGGFGSVYKGEIHGQKIAVKQCIHANRKQEKEFKSEVDALTKARHENVVMFLGSCSEGNNRFLVYEFVCNGSLDQHLSQYSRKPLCWQDRVKVANGAAKGLLYLHQNNIIHRDIKPNNILLTHDCEALLGDFGLAKTVSEEFSCSIECPGNLAYWAPEYAAFGKVSNKTDVYSFGVVLVELITGMKTTDKRLGGKNLVGWARPLLRQGNCQKLVDGRIMESHDCHQLFWLSRLAGNCLNKDPHKRLDMNTVVKALTHIEEGCSGCIVGKDSIDMSKDDMQDSSESDGESGNIESSSITANCKNLKL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5172 360 SUPERFAMILY Protein kinase-like (PK-like) 30 310 IPR011009 -
Psa5g5172 360 PANTHER TYROSINE KINASE FAMILY PROTEIN 4 329 - -
Psa5g5172 360 Pfam Protein tyrosine and serine/threonine kinase 49 309 IPR001245 GO:0004672|GO:0006468
Psa5g5172 360 SMART serkin_6 47 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5172 360 Gene3D Phosphorylase Kinase; domain 1 27 121 - -
Psa5g5172 360 MobiDBLite consensus disorder prediction 330 352 - -
Psa5g5172 360 PIRSF ILK 2 327 - -
Psa5g5172 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Psa5g5172 360 PANTHER OS01G0253100 PROTEIN 4 329 IPR045271 GO:0004714|GO:0006468
Psa5g5172 360 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5172 360 Gene3D Transferase(Phosphotransferase) domain 1 122 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5172 Psa-Chr5 451415182 451416596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5172 35 316 Trihelix Transcription Factor Family AT5G38560 44.407 1.27e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Psa5g5172 PK_Tyr_Ser-Thr 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5172 - - mtr:MTR_3g011630 605.134