Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5171 ATGAGTCGTGTGAAAAAGGAGAATGAAGATGATATGCGCTGCAACGATCAATCACAGTCAATGTTGAATGGTGAGGGTAACAAGGGAAGTGTTGGTGTTGGTGGTGGAGTTGTTCTGAAGAAAGGGCCGTGGACAACTGCAGAAGATGCTATTTTGGTTGAATACGTTCGGAAGCATGGCGAAGGGAACTGGAATGCTGTTCAGAAGCATTCTGGCCTGTTTCGATGTGGAAAAAGCTGCCGACTGAGATGGGCGAATCACTTAAGGCCAAATTTAAAGAAAGGGTCATTTACTGTAGATGAGGAGCAGTTGATTGCTCAACTCCATTTAGAAATGGGAAACAGATGGGCACGTATGGCTGCGCACTTGCCTGGTCGTACAGATAACGAAATAAAGAACTACTGGAATACCCGGACCAAGAGGCGTAATCGGGCTGGCTTGCCACTTTATCCTCCAGAAGTGCGAAAAAAGCAAGGGAGTCAACGTCGCCAAGACACTGTTGGAATCGATAATGGTGATAGAGGGCATCATGGTTTCTTGCCGAAAAACAACTATGAGATGCATGATGTAATGTTTGACAATTTGAAAGAGAATCAAGGAATCTTACCTATTACAGTTGTGCCTGAGAATCCTGACATTTCTGCGAATAGCATTCTGCTAAACAGTCTTGATTCTCCTCCATATTGTAATTCTGTTCCATCAACACTAGTTAACCATCACCATCTTCGAGAATCAACAATGTCTTTTCTTGGCTCAAGTGGAACGAACAAGAATTGGTTTTATCCATTTTACCATGTTCAGGATCATAGTTCTGAGAAGATTGTACAATCATTCGGTTTGCATTCTCCCCTTGATCCTGGTTTCTCCTCACATAACTCAATGTATTACCGCCATTCCCTATCAAATGGCAATTCCTCCACTTCTAAGCCGACATCCAAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACCGGCTTCGGTGGCTGGGGGGGTACTTTTCCCTCACCTCCATTGAATGAGTCTGTTGATGTATTCAATCAGTCTCCTCTGCCACATGGTGCGCTAGAGTCCGGTTGCTCTTCCCCACGTAATAGTGGCACACTCGAGGACATAATTTATCAGAAGAAAACTCTTCCAAATTCAATGAACAATTGTTCTGACAAGAGTTCGCATTCATCTACTGCAACTCCTGTTGAAAGAGCTGAGAGTTCTGCTTTGAACATGAATGAAACAGAATGGGAAGATTACACTGACCATGCATCTTCCTTTGGTGCAACCTCAATCCTGAATGAGTGTCATGCTGTTAACACCAATGCAAACTCATGGGATAAATTGACACCTGCTCAGAACTTTATTGGCAACAATGTGAAATATGAGCCTGTTGACCAAGTTTGTACCCCAAAGAGTGAAAATCAAGGTATGTCTATGTTGAACATCACTTGGCCAGATGTCTTGTTAGCTTCAGATTGGCATGAGCAGTGCTATGGGCATGAGAAGAACATGACTGAGGCTGGTGACAACTTAACAGATTATAAGCATGTGGCTGGTGAGACTTATTCTTCGACTACAGGGGGTTGCTTTATGCACATGGCATAA 1605 0.4361 MSRVKKENEDDMRCNDQSQSMLNGEGNKGSVGVGGGVVLKKGPWTTAEDAILVEYVRKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPNLKKGSFTVDEEQLIAQLHLEMGNRWARMAAHLPGRTDNEIKNYWNTRTKRRNRAGLPLYPPEVRKKQGSQRRQDTVGIDNGDRGHHGFLPKNNYEMHDVMFDNLKENQGILPITVVPENPDISANSILLNSLDSPPYCNSVPSTLVNHHHLRESTMSFLGSSGTNKNWFYPFYHVQDHSSEKIVQSFGLHSPLDPGFSSHNSMYYRHSLSNGNSSTSKPTSKAVKLELPSLQYPETGFGGWGGTFPSPPLNESVDVFNQSPLPHGALESGCSSPRNSGTLEDIIYQKKTLPNSMNNCSDKSSHSSTATPVERAESSALNMNETEWEDYTDHASSFGATSILNECHAVNTNANSWDKLTPAQNFIGNNVKYEPVDQVCTPKSENQGMSMLNITWPDVLLASDWHEQCYGHEKNMTEAGDNLTDYKHVAGETYSSTTGGCFMHMA* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5171 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 143 IPR017930 -
Psa5g5171 534 Gene3D - 40 93 - -
Psa5g5171 534 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 511 - -
Psa5g5171 534 CDD SANT 43 88 IPR001005 -
Psa5g5171 534 SMART sant 40 90 IPR001005 -
Psa5g5171 534 SMART sant 93 141 IPR001005 -
Psa5g5171 534 CDD SANT 96 137 IPR001005 -
Psa5g5171 534 SUPERFAMILY Homeodomain-like 40 135 IPR009057 -
Psa5g5171 534 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 511 - -
Psa5g5171 534 Gene3D - 96 142 - -
Psa5g5171 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 92 IPR017930 -
Psa5g5171 534 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Psa5g5171 534 MobiDBLite consensus disorder prediction 1 27 - -
Psa5g5171 534 ProSiteProfiles Myb-like domain profile. 39 88 IPR001005 -
Psa5g5171 534 MobiDBLite consensus disorder prediction 385 407 - -
Psa5g5171 534 Pfam Myb-like DNA-binding domain 41 88 IPR001005 -
Psa5g5171 534 Pfam Myb-like DNA-binding domain 94 137 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5171 Psa-Chr5 451410330 451414982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5171 7 512 MYB Transcription Factor Family AT3G11440 40.301 6.85e-102 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g5171 Myb_DNA-binding 4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5171 K09422 - gmx:100805804 655.21