Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5164 ATGAAACCGGTTTGTCCTTTTGTTAAAATTCCTCGGCCGGACGATAGTAATGCTTCTAAAAAACCGAGTGAAAACTCAACTAAATATCATGTAGAACATGAAAGTAAGGTGAAGAAAGAGGTTAATGACTCGGCCAGCGTTTCACCGAAGTGTCCAATGGGATATGACTCTCAGACGTTTAAGCTTGGTCCTCTTAGCTGTATGGTATGCCAAGCGCTGCTGTTCGACACCAGTAAATGTGTGCCTTGTTTGCATGTTTTCTGCAAAGCATGTATATCGCGCTTTGAGGACTGTCCGTTATGTGGAGCTGATATTGTGAAGATTGAGCCCGATGACAATCTTCAAGGTGTAGTCGATCGCTTTATTGAAGGTCATGCTAGGATCAAAAGGTCTGTTAATTTAGACAAAGGCGAAGAAGCAACAGAAAATAATAAGCCGGTTATATACGAAGATGTGTCTTTGGAAAGAGGTTCTTTCTTAGTACAACAGGCCATGAGGGCATTCCGCGCTCAGAATTTAGAAAGTGCCAAATCAAGACTCAGCCTATGTGCAGAAGACATTCGTAGTCAGATAGAAAAAGTTGGTAACACTTCAGAGTTATGTTCACAACTTGGAGCAGTCTTGGGTATGCTCGGCGACTGCTGCCGAGCAATGGGTGATAGCAGTTCTGCAGTAACTTATTTTGAAGAAAGTGTTGAATTTCTGTCAAAGTTGCCAAAAGATGATTTGGAGATTACACATACACTTTCCGTTTCACTTAATAAAATTGGTGATCTTAAATATCATGGGGGAGACCTCCAAGCTGCGAGATCATACTATTTTCAATCCTTAAATGTTCGCCGTGATGTTGTCAAGAACAATTCAAATGTTTCATCTCAGGTCTTAGATGTTGCTGTTCTCTCGCAAGTAGCGGATGTTGACAAAATCTAG 930 0.4129 MKPVCPFVKIPRPDDSNASKKPSENSTKYHVEHESKVKKEVNDSASVSPKCPMGYDSQTFKLGPLSCMVCQALLFDTSKCVPCLHVFCKACISRFEDCPLCGADIVKIEPDDNLQGVVDRFIEGHARIKRSVNLDKGEEATENNKPVIYEDVSLERGSFLVQQAMRAFRAQNLESAKSRLSLCAEDIRSQIEKVGNTSELCSQLGAVLGMLGDCCRAMGDSSSAVTYFEESVEFLSKLPKDDLEITHTLSVSLNKIGDLKYHGGDLQAARSYYFQSLNVRRDVVKNNSNVSSQVLDVAVLSQVADVDKI* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5164 309 PANTHER RING FINGER PROTEIN 41, 151 1 308 - -
Psa5g5164 309 SUPERFAMILY RING/U-box 60 108 - -
Psa5g5164 309 ProSitePatterns Zinc finger RING-type signature. 83 92 IPR017907 -
Psa5g5164 309 Gene3D Tetratricopeptide repeat domain 166 293 IPR011990 GO:0005515
Psa5g5164 309 ProSiteProfiles Zinc finger RING-type profile. 67 101 IPR001841 -
Psa5g5164 309 SMART ring_2 67 101 IPR001841 -
Psa5g5164 309 MobiDBLite consensus disorder prediction 1 38 - -
Psa5g5164 309 MobiDBLite consensus disorder prediction 14 38 - -
Psa5g5164 309 PANTHER PROTEIN NCA1 1 308 - -
Psa5g5164 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 146 IPR013083 -
Psa5g5164 309 SUPERFAMILY TPR-like 160 283 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5164 65 115 C3H Transcription Factor Family AT2G30580 35.484 7.73e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5164 - - mtr:MTR_3g011510 561.607