Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5154 ATGGCAACAACAAAACTCACACTCATTTCCACTCTTAAATTTCTCATCTTCATGACCCTTTTCACAAAACCAATTGCACAATCTCCAAACTATGTAGGTGATGATTGTCAAAATTCAACAGAACAATCTCTTACAACTACATACAAATCAAACCTTAAAAAAGTGCTATCATTGCTATCCTCAGATGCTATTGTAAGCAAAGGATATAACCATACAAGCATAGGAGCAAACACAGTTGATGGTGTCTATGGTCTCTATGATTGTAGGGGTGATGTCACAGGTTCTTTTTGTCAATTTTGTGTCTCTACTGCTGCTTCAGATATTCTTCAACACTGCCCTAATAGACCCTCAGCTGTTATATGGTACAACTTTTGCATTCTCAGGTATTCAAACCATAACTTCTTTGCGAAACTAACGACGACACCATCATGGCATATTTTGGGGTCGAAAAACATCAATAATCCACAAGAAGTTGAGAAAGGTGAAGATAATATGCAAAGTTTAATAAAAGAAGCTACTATGGAGAGTGGAAAATTGTATGCAATGGGAGAGTTCAATTTGAGTGATGAGAAAAGGTATGGGTTGGTGCAATGTAGTAGGGACCTTAGTGAGAATGAATGTAATCAATGTTTGGAGGCTATGTTAGACAAAGTTCCTAAATGTTGTGGGACAAAGATTGGTTGGCAAGTTCTTGCTCCAAGTTGTTTGATAAAGTATGATGATTTTATTTTCTATCAACTTATTTCTCAAACTTCTTCTCCTTTGCATGATTCAGCTAAGCAAGGAGGTTCATCAAGTAAATCAAATACTTTAATCATCACCATTGTTGTTGTGCTGGTGGTTGCACTTGCTCTCATGAGTTTATGCATCTACTTCCTATGGAGGAGATATCATTCAAATAAAGATGGATTGATGTCAAAAACAATCACTATATCTCATCATGTTGATATTCATAGAGAGAATTCTTTACATGGTGATCTCCCAATAATTCCTTTAATTTGGATTCGACAAAGTACTAATAACTTTTCAGAGTTATGTAAATTAGGAGAAGGTGGATTTGGCCCTGTTTATAAGGGTAATTTAGTAAATGGAACAGAAGTTGCAATTAAAAGACTCTCAATAACATCTGGTCAAGGATCAGAAGAGTTTAAGAATGAAGTAATCTTTATAGCTAAATTGCAACATAGAAATCTTGTGAGACTTTTGGGTTGTTGCATTGAAGATAATGAAAAGTTACTTGTATATGAATACATGCCAAATTCAAGCCTTGACTTTCATCTATTTGATGAAGAAAAAAGGAAAGTTCTAGATTGGAAGTTAAGAATGAACATTATTAATGGAATTGCAAAAGGGCTCTTGTACCTTCATGAAGACTCTAGACTTAGAGTAATCCATAGAGACTTAAAAGCTAGTAATGTTCTTCTAGATCAAGAGATGAATCCAAAAATATCTGATTTTGGATTAGCAAGGTCATTTGAAAAAGACCAAAGTCAAGAAAATACAAGAAGAGTTATGGGCACCTAG 1524 0.3471 MATTKLTLISTLKFLIFMTLFTKPIAQSPNYVGDDCQNSTEQSLTTTYKSNLKKVLSLLSSDAIVSKGYNHTSIGANTVDGVYGLYDCRGDVTGSFCQFCVSTAASDILQHCPNRPSAVIWYNFCILRYSNHNFFAKLTTTPSWHILGSKNINNPQEVEKGEDNMQSLIKEATMESGKLYAMGEFNLSDEKRYGLVQCSRDLSENECNQCLEAMLDKVPKCCGTKIGWQVLAPSCLIKYDDFIFYQLISQTSSPLHDSAKQGGSSSKSNTLIITIVVVLVVALALMSLCIYFLWRRYHSNKDGLMSKTITISHHVDIHRENSLHGDLPIIPLIWIRQSTNNFSELCKLGEGGFGPVYKGNLVNGTEVAIKRLSITSGQGSEEFKNEVIFIAKLQHRNLVRLLGCCIEDNEKLLVYEYMPNSSLDFHLFDEEKRKVLDWKLRMNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLARSFEKDQSQENTRRVMGT* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5154 507 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Psa5g5154 507 Gene3D - 30 134 IPR038408 -
Psa5g5154 507 Gene3D - 141 244 IPR038408 -
Psa5g5154 507 SMART serkin_6 342 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5154 507 SUPERFAMILY Protein kinase-like (PK-like) 320 507 IPR011009 -
Psa5g5154 507 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 507 - -
Psa5g5154 507 ProSiteProfiles Gnk2-homologous domain profile. 140 244 IPR002902 -
Psa5g5154 507 PANTHER PROTEIN KINASE DOMAIN 21 507 - -
Psa5g5154 507 ProSiteProfiles Protein kinase domain profile. 342 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5154 507 Pfam Salt stress response/antifungal 162 240 IPR002902 -
Psa5g5154 507 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Psa5g5154 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Psa5g5154 507 Pfam Protein tyrosine and serine/threonine kinase 346 500 IPR001245 GO:0004672|GO:0006468
Psa5g5154 507 Gene3D Transferase(Phosphotransferase) domain 1 418 507 - -
Psa5g5154 507 Gene3D Phosphorylase Kinase; domain 1 305 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5154 Psa-Chr5 449480219 449487615 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5154 14 507 Receptor kinase-like Gene Family AT4G05200 41.406 2.56e-130 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa5g5154 PK_Tyr_Ser-Thr 3.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5154 - - lja:Lj0g3v0351729.1 746.503