Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5145 ATGACATCGGAGTCCTCTAGCATCTCGATCACTTCACAAGATCAAGGTGATTCTTCCCACTCAAAAAATGTGGTCAACATGGAGGTTGAACAAGATCGATCCTCGAATTCTAATTCTAACAATCTAATTGATTTTGTGATGCTATCGAAAGAGGATTCCATTCCCTTGTTAAAGGTACAAGAGCATGATTTTTTTAATCTTACGCAAGTTGCTTCATCGTCTTGTTTACCTAATGACAACATTGAACAGAAAGATAAGAACAACATTGAAGAGAGTTCCGATTTAAGATCTTTTTCATGCTCTTTTTGTAAGAGAAAATTTTCGACTTCACAAGCATTAGGAGGTCATCAGAATGCTCATAAGGCTGAACGCGCTTTAGAAAAACAACGTAAACAAAGGTACGATGGCAGTGTTTTAGGTTTAGGGCAATCTCACTTTAACCCTTTTTTTAGTTATTCAAGCAATATTTTTACACCTTATAATTATAACTATAGACTTGGGGTTAGAATGGATTCCACAATTCAAAAACCACCTTATTTTAGCCCTAGGACAACCCCACATAATTTTGGTTATGCTAATGGTGCCTTGTGTTTTCAAGATATACTAAACCCTTCTGTTATGACATTGAGAAATATGGGAGGTGGGAATAGTGGAATTGGAACCCTAGCTATTGGGGGTGCAACTAGTTTAAAACTTGAAGATGGTGGTATTGGAACCCTAGGGATTGGGGGTTCAACTAGTTTAAAAGTTGAAGATGGTAGTATTGAAACCCTAGGTATTGGGGGTTCAACTAGTTTTAAAGTTGAAGATGGTGGTGTTGAAACTCTGCGTATCGGGGGTGCAACTAGTTTAAAAGTTGAAGATGGTAGTGCAAATGATAAATTTAGTGCTCTTTTGAAATTTGGAGATTCTTCCACAAATATTGCTACAACTTCAAACTCAAACATAGAAAAGAAAATTATTATGGCTTCTCCTTCTATCAAGGATGATATTAATGATCAATCAAAATCCAATATTGAAGAAGAACCCTCAAATTCGGAATCTTCTGATCTTGATTTATCACTTAAGCTTTAA 1074 0.3594 MTSESSSISITSQDQGDSSHSKNVVNMEVEQDRSSNSNSNNLIDFVMLSKEDSIPLLKVQEHDFFNLTQVASSSCLPNDNIEQKDKNNIEESSDLRSFSCSFCKRKFSTSQALGGHQNAHKAERALEKQRKQRYDGSVLGLGQSHFNPFFSYSSNIFTPYNYNYRLGVRMDSTIQKPPYFSPRTTPHNFGYANGALCFQDILNPSVMTLRNMGGGNSGIGTLAIGGATSLKLEDGGIGTLGIGGSTSLKVEDGSIETLGIGGSTSFKVEDGGVETLRIGGATSLKVEDGSANDKFSALLKFGDSSTNIATTSNSNIEKKIIMASPSIKDDINDQSKSNIEEEPSNSESSDLDLSLKL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5145 357 PANTHER ZINC FINGER PROTEIN KNUCKLES 71 357 - -
Psa5g5145 357 MobiDBLite consensus disorder prediction 328 357 - -
Psa5g5145 357 SUPERFAMILY beta-beta-alpha zinc fingers 96 126 IPR036236 -
Psa5g5145 357 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Psa5g5145 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Psa5g5145 357 PANTHER ZINC FINGER PROTEIN JAGGED 71 357 IPR045320 GO:0003700
Psa5g5145 357 MobiDBLite consensus disorder prediction 1 22 - -
Psa5g5145 357 Gene3D Classic Zinc Finger 81 139 - -
Psa5g5145 357 MobiDBLite consensus disorder prediction 327 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5145 Psa-Chr5 449241000 449242073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5145 90 185 C2H2 Transcription Factor Family AT1G80730 42.308 1.30e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g5145 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5145 - - mtr:MTR_3g011970 299.671