Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5144 ATGAAGAAGAAGCTCGATACCCGTTTTCCTGCTGCTCGGATAAAGAAGATAATGCAAGCGGACGAGGACGTTGGAAAGATAGCACTAGCAGTCCCTGTTTTAGTTTCAAAAGCCTTGGAATTATTTCTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTGCAGAGAGGAGCAAAGACCATGAATGCATTGCATTTGAAACATTGTGTACAAAGTTACAACGTCTTCGACTTTTTAAGAGACATCGTCAGCAGGGTTCCTGACTACGGGCACGGCCATGGCCATCCTGAGACTGGAGCTGATGACCGCACCCTTCCGAAGAGAAGGAAACCTGCTGCCGACGATTGCAATGACAGCGATGAAGAGACTAAGCGGAGTAAAATGCTAGAGTTGGGCCACACCGGCGGAACTGGTAGGGGAAGAGGGAGAGGTAGAGGAAGAGGCCGCGGTCGAGGAGCTCGAACCGCAGAGAAAGAGACCTTACATCAGCAGGTTGAATCTGAACCTTGCACCTCTATTCATCAAAGTAGCAAAGAAGCCCCTGATACAAATATGGCAATCGATAACGGTCCGGAACCAAAGGAGTTATCAAAGGAAAACATTTCAGTTCACGACGAAAGCACTCGATCTTTCCGAAACATCGATTTAAATGCCAATATACAAGAAAACGAGGACAGAGAGAATACAAGCACGGCCACTCCTCAGGCCTCGTTGCCTGAACCCGCTGCAATAACGGATATGCAACATGAAGAAATTCCAGGTTGGTCCCTTGCTGATGTCGACAAGATGGCGATCGACACGTTACAGCTCGCAGCGAATCTCGGTAATAGACTAGACGAGGAGGAGGAAGATTATGATGAGGAGGAAGGGTAA 876 0.4772 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYGHGHGHPETGADDRTLPKRRKPAADDCNDSDEETKRSKMLELGHTGGTGRGRGRGRGRGRGRGARTAEKETLHQQVESEPCTSIHQSSKEAPDTNMAIDNGPEPKELSKENISVHDESTRSFRNIDLNANIQENEDRENTSTATPQASLPEPAAITDMQHEEIPGWSLADVDKMAIDTLQLAANLGNRLDEEEEDYDEEEG* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5144 291 MobiDBLite consensus disorder prediction 91 185 - -
Psa5g5144 291 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Psa5g5144 291 MobiDBLite consensus disorder prediction 151 165 - -
Psa5g5144 291 Coils Coil 272 291 - -
Psa5g5144 291 MobiDBLite consensus disorder prediction 91 130 - -
Psa5g5144 291 MobiDBLite consensus disorder prediction 220 239 - -
Psa5g5144 291 SUPERFAMILY Histone-fold 3 97 IPR009072 GO:0046982
Psa5g5144 291 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 289 - -
Psa5g5144 291 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Psa5g5144 291 MobiDBLite consensus disorder prediction 166 184 - -
Psa5g5144 291 PANTHER HISTONE SUPERFAMILY PROTEIN 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5144 Psa-Chr5 449221083 449224078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5144 1 279 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.361 8.72e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Psa5g5144 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5144 K21752 - gmx:100810093 404.06