Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5129 ATGTCCACCACAGCTCCACCACCATCCACCACCGTAACTACCACCGCCGGCGTAGGTCTCGGCTACGGCATCGCAATTGCCGTAAGCATCCTCGTCCTCATCTCAACCATCATGCTCGCTTCCTACATTTGCGTCCGCTTAAAATCCCAAGGCCGCCGCAACTCCTTCCATCTCAACCGCGAAAATGTAACTATAAATCAAAATTATATCAACGGCTCGGGGTTTCAGCCCGAGCCGTTTATCTTGGGCTTAGAAAAGCCTGTGATTGATTCCTACCCGAAGATGATACTTGGAGAGAGTCTCCGACTGCCGAAGCGTAATGAAGGACCGTGTTCGATCTGTTTGAATGATTATCTTCCGAAAGAAACTATAAGGTGCGTTCCGGATTGTCAGCATTGTTTTCATGCGGAATGTGTTGATGAGTGGCTTCGGGTGAGTGCCACGTGTCCGCTGTGCCGGAACTCGCCTGCTCCGTCGCCAGTGGCTACGCCGTTGTCGGAGCTTGTTCCTCTGGCTTTTCATGCCAGGGTAGTTGGGAGAACCAAGGAGGTTAGACCTATTAAATGGGTTCCACCTAGCTCAGGTATGGTGAAGCTTAATGTTGATGGTGCTTGCATTGAGGGTTGCTGGTTTGAGAGGTTTTGCCAAGAATGTGGGCATCTGTAG 666 0.509 MSTTAPPPSTTVTTTAGVGLGYGIAIAVSILVLISTIMLASYICVRLKSQGRRNSFHLNRENVTINQNYINGSGFQPEPFILGLEKPVIDSYPKMILGESLRLPKRNEGPCSICLNDYLPKETIRCVPDCQHCFHAECVDEWLRVSATCPLCRNSPAPSPVATPLSELVPLAFHARVVGRTKEVRPIKWVPPSSGMVKLNVDGACIEGCWFERFCQECGHL* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5129 221 CDD RING-H2_EL5_like 111 153 - -
Psa5g5129 221 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Psa5g5129 221 SMART ring_2 111 152 IPR001841 -
Psa5g5129 221 Pfam Ring finger domain 111 153 IPR001841 -
Psa5g5129 221 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 21 159 - -
Psa5g5129 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 158 IPR013083 -
Psa5g5129 221 SUPERFAMILY RING/U-box 94 158 - -
Psa5g5129 221 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5129 Psa-Chr5 448710572 448712850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5129 1 176 C3H Transcription Factor Family AT5G07040 59.777 3.16e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5129 - - lja:Lj3g3v0787250.1 248.825