Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5127 ATGGCATCAATGTCGGCATCTGGTTCATGGAGTGGTAAGGAGAACAAAGCATTTGAAAGGGCATTAGCTGTGTTTGATAAAGACACACCTGATCGTTGGTCGAATGTTGCTAAAGCTGTTGGTGGAGGAAAAACTGCTGAAGATGTTAAGAGACAGTATGAACTTCTTGTTAGGGATATTAGGCACATTGAATCAGGTCAAGTTCCATTCCCAAATTAG 219 0.4155 MASMSASGSWSGKENKAFERALAVFDKDTPDRWSNVAKAVGGGKTAEDVKRQYELLVRDIRHIESGQVPFPN* 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5127 72 SUPERFAMILY Homeodomain-like 8 65 IPR009057 -
Psa5g5127 72 SMART sant 6 59 IPR001005 -
Psa5g5127 72 CDD SANT 9 57 IPR001005 -
Psa5g5127 72 Gene3D - 2 70 - -
Psa5g5127 72 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 72 IPR044636 GO:0003700
Psa5g5127 72 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 2 72 - -
Psa5g5127 72 ProSiteProfiles Myb-like domain profile. 8 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5127 Psa-Chr5 448516505 448517453 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g5127 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5127 - - vra:106761815 127.487