Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5126 ATGGCATCAATGTCAGCATCTGGTTCATGGAGTGGTAAGGAGAACAAAGCATTTGAAAGGGCATTAGCTGTGTTTGATAAAGACACGCCTGATCGTTGGTCGAATGTTGCTAAAGCTGTTGGTGGAGGAAAAACTGCTGAAGATGTTAAGAGACAGTATGAACTTCTTGTTAGGGATATTAGGCACATTGAATCAGGTCAAGTTCCATTCAACAACAATGGCTACCTTCATCACGAAAAGGTTTAG 246 0.4146 MASMSASGSWSGKENKAFERALAVFDKDTPDRWSNVAKAVGGGKTAEDVKRQYELLVRDIRHIESGQVPFNNNGYLHHEKV* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5126 81 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 72 IPR044636 GO:0003700
Psa5g5126 81 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 2 72 - -
Psa5g5126 81 SMART sant 6 59 IPR001005 -
Psa5g5126 81 CDD SANT 9 57 IPR001005 -
Psa5g5126 81 Gene3D - 2 70 - -
Psa5g5126 81 SUPERFAMILY Homeodomain-like 8 65 IPR009057 -
Psa5g5126 81 ProSiteProfiles Myb-like domain profile. 8 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5126 Psa-Chr5 448494382 448495352 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g5126 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5126 - - gmx:100804396 124.02