Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5111 ATGAATGAAAAACAAGAAACCAAAGACCAAAACCCTCCAACATCACAAGACTCACAAAAGAAACAACAAACCATCATCATCAACTCAACAAATGAGAGACTAAAAAGAGATGAATGGAGTGAAGGAGCAGTGACAACACTTCTTGAGTCCTATGAATCAAAATGGATACTCAGAAACCGAGCAAAACTCAAAGGACAAGATTGGGAGGACGTCGCGAGACATGTTTCGTCGCGATCGAATTCGACTAAGTCGCCGAAAACACAAACTCAGTGTAAGAATAAGATTGAGTCAATGAAGAAAAGGTATAGATCGGAGTCAGCTAGCTCAGATGTTTCTGCTTGGCCTTTGTATTCTAGGCTTGATCTTCTTCTTCGTGGGACGGGACAATTAGCTACGAATGTTGCTACGAAATTGCTACAAGTAAGTAGTAATAATAATAATAATAGTAATATTAATCATGGTTTGGTTTTGTTGGAACCTTCACAACAAGGGATTGATGAAGCTAATCAGCTACCAGATCCTACTAGTGTTGCTAATCCACCATTAATTGCGACTACTCAAAACTCTCATGGATCAAATGGGTTTGATAAATTAGCCAAGGAAGAAGAGTTAGAAACTAAGTCATCTGATCATGGACCTAACAAGAATCCATTGGAAACCGATAGCAGCACGCCTGCGCTCTACAGCGAAAAAGACGAACAAAGATGCAAAAAGCGGAGAATGAGATCGGAGAACAACAATAACAAGAGACAGAAGAAAGAATCAATAGGAATAGCAGAAAGCATAAGGTGGCTAGCAGAAGTTGTTGTAAGGTCAGAGCAAACAAGAATGGACACATTGAAAGAGATAGAGAAGATGAGAGTTGAAGCTGAGGCAAAGAGAGGGGAAATGGAAATCAAGAGGACTGAAATTATTGCTAATACACAACTTGAGATTGCTAGGATCTTTGCAAGTGTTAATAATAAAGATAAAGATGTTGATTCATCATTGAGAATTGGAAGAAGTTAA 1008 0.3869 MNEKQETKDQNPPTSQDSQKKQQTIIINSTNERLKRDEWSEGAVTTLLESYESKWILRNRAKLKGQDWEDVARHVSSRSNSTKSPKTQTQCKNKIESMKKRYRSESASSDVSAWPLYSRLDLLLRGTGQLATNVATKLLQVSSNNNNNSNINHGLVLLEPSQQGIDEANQLPDPTSVANPPLIATTQNSHGSNGFDKLAKEEELETKSSDHGPNKNPLETDSSTPALYSEKDEQRCKKRRMRSENNNNKRQKKESIGIAESIRWLAEVVVRSEQTRMDTLKEIEKMRVEAEAKRGEMEIKRTEIIANTQLEIARIFASVNNKDKDVDSSLRIGRS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5111 335 MobiDBLite consensus disorder prediction 7 30 - -
Psa5g5111 335 Coils Coil 280 300 - -
Psa5g5111 335 Pfam Myb/SANT-like DNA-binding domain 36 122 IPR044822 -
Psa5g5111 335 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 7 331 - -
Psa5g5111 335 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 7 331 IPR044823 -
Psa5g5111 335 MobiDBLite consensus disorder prediction 200 214 - -
Psa5g5111 335 MobiDBLite consensus disorder prediction 1 31 - -
Psa5g5111 335 MobiDBLite consensus disorder prediction 77 92 - -
Psa5g5111 335 Gene3D - 39 104 - -
Psa5g5111 335 MobiDBLite consensus disorder prediction 200 254 - -
Psa5g5111 335 MobiDBLite consensus disorder prediction 226 254 - -
Psa5g5111 335 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5111 Psa-Chr5 447873310 447874950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5111 35 132 Trihelix Transcription Factor Family AT3G14180 35.294 3.26e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa5g5111 Myb_DNA-bind_4 2.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5111 - - gmx:100799917 392.889