Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5107 ATGAGTATGTTAGGCCTAAGAGACCTAGTCCTCATAGCTCCATCACCTTCATCTCTTCATCATCATCAACAACAGCAACAACACAATCATCAAAACCAACAAATTTCATCAGATCACAATTCATCAGCTTCCTTAAGTGTCGGTTTTGGAATTTTCCCACTCCTTACAGCCACACCCTGCATGCCGCCACAACAACAACCAAACCAATCTCAAAACAATGAAGTTCAAGAAAATAGTAACAACAATTTTTGGAACCTTAGGATGTGTCCTGAGGTTTCAAAAAAAGGAGTGATAACTGATAATAATAATAATAATAATAATAATAACAATGATGATGATGAGAATCATCATCATAATAATAGTAACAAGATGGTTATGATGGAGAGTGAAGAGAATGGTGTGTATGGTTCTGAGTATAGAGTGTGTCATGATTGTGGTAATAGAGCGAAGAAAGATTGTGTTTATAGGAGATGTAGGACTTGTTGTAAGGGACGTGGTTATGATTGTAGTACTCATTTGAAGAGTACTTGGATTCCGTCCACTCGTCGGCGGGATCGGGAAGGGGAGATTGTTGGTGGTGGTGGCAGCGGTGGTGGTGGTGGTGATGGTGGTGGTGAAGGTTGTTCTGGTGTTAAGAGACCAAAGATTTTGTTAGGGTCATCACAGAATGCTACTGCTACTTCTCATAGTTCAAATTCTAATGGTACTACACCAAAGAGTTTTGCTAATAGCTCTTGTCATCAAGATGCTAGTTTCAAGGAGGCATTACCAGGTCAAGTTCATGCACCTGCTGTATTCAGATGCCATAGAGTAACTGCTATTGGAAATGGAGAAGATGAATTTGCTTATTTGGCAACGGTTCATATTAGTGGCCATGTGTTTAAAGGGTTTCTCTATGATCATGGTGTTGATGGGAAAAATCCAATGCCTTGTGTTTCTGAACTTCAATTGGGAAACAATTGTAGTGGAAAAAATGGTGAATGTTCTTCTGCAATTGGTGTTCAAACTAATAGTGCTTACCCTGCTTCTGCTAGCTAG 1038 0.396 MSMLGLRDLVLIAPSPSSLHHHQQQQQHNHQNQQISSDHNSSASLSVGFGIFPLLTATPCMPPQQQPNQSQNNEVQENSNNNFWNLRMCPEVSKKGVITDNNNNNNNNNNDDDENHHHNNSNKMVMMESEENGVYGSEYRVCHDCGNRAKKDCVYRRCRTCCKGRGYDCSTHLKSTWIPSTRRRDREGEIVGGGGSGGGGGDGGGEGCSGVKRPKILLGSSQNATATSHSSNSNGTTPKSFANSSCHQDASFKEALPGQVHAPAVFRCHRVTAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKNPMPCVSELQLGNNCSGKNGECSSAIGVQTNSAYPASAS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5107 345 MobiDBLite consensus disorder prediction 17 40 - -
Psa5g5107 345 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 344 - -
Psa5g5107 345 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 344 IPR007818 GO:0003700|GO:0006355
Psa5g5107 345 Pfam Domain of unknown function (DUF702) 140 304 - -
Psa5g5107 345 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 256 303 IPR006511 -
Psa5g5107 345 MobiDBLite consensus disorder prediction 181 205 - -
Psa5g5107 345 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 141 183 IPR006510 -
Psa5g5107 345 MobiDBLite consensus disorder prediction 221 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5107 Psa-Chr5 447667494 447671477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5107 1 331 C2H2 Transcription Factor Family AT5G12330 41.813 5.59e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Psa5g5107 DUF702 5.7e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5107 - - vun:114175485 396.741