Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5093 ATGGATTCAGCTCCACCATTGTTGGAGCTAGACCTTAACAACCTTAAAGCCCTCAAAATCCTAGGTAAAGGTGCCATGGGCACTGTCTTCCTCATCCGCCACCCCACAACCAACAATAACAACAACAACCTCTTGGCCCTTAAAGTCGTCGACAAAACCTCCATGCACGCCAAACTCGACGCCGAACGCCGTGCCCGTTGGGAAATCCAAGTTCTGTCAACGCTCTCCCACCCTTTTCTCCCTTCCATTATAGGCATATACGAATCGCCACAATTTCTTGCATGGGCCCTACCCTATTGTCCAGGTGGTGATCTCAATGTCCTCCGTTACCACCAACAGGACCGCGTTTTCTCTCCCACTGTTATTCGATTCTACCTGGCTGAAATCATCTGCGCTCTCGACCACCTTCATTCCATGGGCATCGCTTACCGTGACTTAAAACCCGAAAATGTCCTTATCCAGCGTTCCGGCCACGTTACCCTCACCGATTTCGATCTATCTCGAAAACTCAAACACAAAACCGATAATAAGATTGTTTCAACATTGTCTTTGCCTGATTCGAAGGTTCAACAAGCTTCCAGAAAACACCGACGGAACTTCTCTCGCTGGATCCAACTTCTTCCAAAGGAATCTTCTCAGTATTATCATCACCGGATGAATGGATTGAGTTTGAAGAAGACAATGTCAGCAAGAGTTAGCCCAGTGAGCCGTCAGAAACAGAGTTTCTCAAACGGCGAACGGTCGAACTCGTTCGTTGGAACAGAGGAATACGTTTCGCCAGAGGTTGTTCACGGCGATGGTCATGAGTTTTCTGTTGATTGGTGGGCGCTGGGGATTCTGACATACGAAATGTTATACGGTAGAACACCGTTCAAGGGGAAGAATCGGAAGGAAACGTTTAGAAATGTTCTGACGAAGTCGCCGGAGTTCGTTGGGAAAAGGACAGAGTTGACGGATCTGATAGAGAAATTGTTGGAGAAGGTTCCTACGAAGAGATTGGGTTATAAACGTGGTGCTATTGAGATCAAAGAGCACGGGTTCTTCAGAGGGGTTAATTGGGAAATGTTGACGAAGGTGGTGCGGCCGCCGTTCATTCCGTCCAGAGATGAAATCACCTTTTCTGATGGAAAGGGCGGTGTGAATATTGTGGATTATTTTCAGCGGTTGAAACCGCCTTCGCCGATGCGTAATGTACCTTTGCCGTTACCGTCGCCGCCTTGTGATAAGTTTAGAAAAAATGTTTCGCTAACGGCATTCTGA 1260 0.4754 MDSAPPLLELDLNNLKALKILGKGAMGTVFLIRHPTTNNNNNNLLALKVVDKTSMHAKLDAERRARWEIQVLSTLSHPFLPSIIGIYESPQFLAWALPYCPGGDLNVLRYHQQDRVFSPTVIRFYLAEIICALDHLHSMGIAYRDLKPENVLIQRSGHVTLTDFDLSRKLKHKTDNKIVSTLSLPDSKVQQASRKHRRNFSRWIQLLPKESSQYYHHRMNGLSLKKTMSARVSPVSRQKQSFSNGERSNSFVGTEEYVSPEVVHGDGHEFSVDWWALGILTYEMLYGRTPFKGKNRKETFRNVLTKSPEFVGKRTELTDLIEKLLEKVPTKRLGYKRGAIEIKEHGFFRGVNWEMLTKVVRPPFIPSRDEITFSDGKGGVNIVDYFQRLKPPSPMRNVPLPLPSPPCDKFRKNVSLTAF* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5093 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Psa5g5093 419 Gene3D Transferase(Phosphotransferase) domain 1 104 181 - -
Psa5g5093 419 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 10 391 - -
Psa5g5093 419 Gene3D Phosphorylase Kinase; domain 1 15 103 - -
Psa5g5093 419 Pfam Protein kinase domain 17 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5093 419 Pfam Protein kinase domain 242 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5093 419 ProSitePatterns Protein kinases ATP-binding region signature. 21 48 IPR017441 GO:0005524
Psa5g5093 419 ProSiteProfiles Protein kinase domain profile. 15 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5093 419 SUPERFAMILY Protein kinase-like (PK-like) 12 401 IPR011009 -
Psa5g5093 419 Gene3D Transferase(Phosphotransferase) domain 1 242 367 - -
Psa5g5093 419 PANTHER FLIPPASE KINASE 1-RELATED 10 391 - -
Psa5g5093 419 SMART serkin_6 15 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5093 Psa-Chr5 447002670 447006229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5093 10 399 AGC Kinase Gene Family AT3G20830 57.107 2.21e-153 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Psa5g5093 Pkinase 8.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5093 - K08286 gmx:100785281 582.022