Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5091 ATGCCTCGGTCACGCTCAATTCAAAACGAGAGGCCATATGTATGTACCCTTGAGGATTGTAATGCAAGTTACAGAAGAAAGGACCATTTGAATCGTCACCTTCTACAACATCAAGGGAAAAATTTCAAATGTCCCATTGAGAATTGCAAAAGTGATTTCTCTTTGCAAAGCAATTTGAAAAGACATCTTGTTGAGATGCATGATGAAAATTCTACACCTCCTAGGAATGGTGAAAATCAGAAGCGTTTTGTATGTCCTGAAATTGGTTGCGGAAAGGTTTTTCGATATGCATCACAGCTACAGAAGCATGAAGATTCTCATGTTATGCTGGAGACAGTTGATGTGGTGTGCTTAGAGCCGGGCTGCTTGAAACATTTCACCAATTCCGAGTGCCTTAAGGCTCATGTTAAGTCCTGCCATCAATATGTAACCTGTGACACCTGTGGGACTAAGCAACTGAAGAAGAACATGAAAAGGCATCTCCGTACACACGAAACCGGCATTTCAACAGAACCCTTTAAATGTGAATTTAAAGATTGTGACTGCACATTCTCAACCAAATCTAATCTTCAAAAGCATGAGAAGGCAGTCCACTTAGAATTAAGGCGTTTTGTGTGTGGATTTCCTAACTGCGGAATGAGATTTGCTTACAAACACGTGAGAGACAATCACGAAAAGACGGCAAAACATCTTTTTACCCTTGGTGATTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCAAGGGGAGGGGTGAAGAGAAAATGTCCTACAGTTGATATGTTGATTAGGAAGAGAGTTACTCCACCTGGTCAATTGGAGAACTTGTTGTTTATGCAGACCTGTGAGCAAGATGGATCATATCATACTCCTCTCTAG 879 0.4107 MPRSRSIQNERPYVCTLEDCNASYRRKDHLNRHLLQHQGKNFKCPIENCKSDFSLQSNLKRHLVEMHDENSTPPRNGENQKRFVCPEIGCGKVFRYASQLQKHEDSHVMLETVDVVCLEPGCLKHFTNSECLKAHVKSCHQYVTCDTCGTKQLKKNMKRHLRTHETGISTEPFKCEFKDCDCTFSTKSNLQKHEKAVHLELRRFVCGFPNCGMRFAYKHVRDNHEKTAKHLFTLGDFEEADEEFRSRPRGGVKRKCPTVDMLIRKRVTPPGQLENLLFMQTCEQDGSYHTPL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5091 292 PANTHER ZINC FINGER PROTEIN 6 273 - -
Psa5g5091 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 112 IPR013087 -
Psa5g5091 292 ProSitePatterns Zinc finger C2H2 type domain signature. 85 107 IPR013087 -
Psa5g5091 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 203 IPR013087 -
Psa5g5091 292 PANTHER - 6 273 - -
Psa5g5091 292 SUPERFAMILY beta-beta-alpha zinc fingers 154 212 IPR036236 -
Psa5g5091 292 SUPERFAMILY beta-beta-alpha zinc fingers 40 107 IPR036236 -
Psa5g5091 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 72 IPR013087 -
Psa5g5091 292 ProSitePatterns Zinc finger C2H2 type domain signature. 206 230 IPR013087 -
Psa5g5091 292 ProSitePatterns Zinc finger C2H2 type domain signature. 175 198 IPR013087 -
Psa5g5091 292 SMART c2h2final6 204 230 IPR013087 -
Psa5g5091 292 SMART c2h2final6 83 107 IPR013087 -
Psa5g5091 292 SMART c2h2final6 173 198 IPR013087 -
Psa5g5091 292 SMART c2h2final6 13 37 IPR013087 -
Psa5g5091 292 SMART c2h2final6 42 67 IPR013087 -
Psa5g5091 292 SMART c2h2final6 143 164 IPR013087 -
Psa5g5091 292 SMART c2h2final6 115 140 IPR013087 -
Psa5g5091 292 ProSitePatterns Zinc finger C2H2 type domain signature. 117 140 IPR013087 -
Psa5g5091 292 Gene3D Classic Zinc Finger 3 39 - -
Psa5g5091 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Psa5g5091 292 ProSitePatterns Zinc finger C2H2 type domain signature. 44 67 IPR013087 -
Psa5g5091 292 Gene3D Classic Zinc Finger 71 141 - -
Psa5g5091 292 Gene3D Classic Zinc Finger 40 70 - -
Psa5g5091 292 Pfam Zinc finger, C2H2 type 13 37 IPR013087 -
Psa5g5091 292 Pfam Zinc finger, C2H2 type 173 198 IPR013087 -
Psa5g5091 292 Pfam Zinc finger, C2H2 type 83 107 IPR013087 -
Psa5g5091 292 Gene3D Classic Zinc Finger 142 230 - -
Psa5g5091 292 SUPERFAMILY beta-beta-alpha zinc fingers 8 39 IPR036236 -
Psa5g5091 292 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5091 10 233 C2H2 Transcription Factor Family AT1G72050 50.182 1.58e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g5091 zf-C2H2 0.00027 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5091 K09191 - gmx:100801812 456.832