Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5090 ATGAAAATCCCTTGTTGTTCGGTGTGCCAAACGCGGTACAACGAAGAAGAACGAGTTCCGCTTCTTCTTCAATGTGGCCATGGCTTCTGTAAAGAGTGTCTGTCTAGAATGTTCTCGGCTTCTTCCGACGCCACTCTCACTTGTCCACGGTGTCGCCACGTGTCAACCGTCGGTAACTCCGTTCAAGCGTTGCGGAAAAACTATGCGGTGCTTTCGTTAATCCACTCCGCCGCCGAAGCTGCCGCTGCCGGAGGTGGCGGTAGAGGTTCGAATTTTGAATGTGATTACACGGACGATGAGGAGGATGGTGACGGTGGGGATGACGGCGAGGTTGACGACGGCGACGACGAGAAACGTCGCCGGAACAGCCGTGGCTCGCAGACTTCGAGTTCTGGAGGTTGTGCTCCGGTGATTGAGGTCGGTGTACATCAGGATTTGAAGCTTGTGAGGCGGATTGGTGAAGGGAGGAGAGCTGGTGTGGAGATGTGGACGGCGGTGATCGGAGGTGGACGGTGTCGGCATCATGTGGCAGTGAAGAAGGCTGTTATGATGGAGGGAATGGATTTGGATTGGATGTTAGGGAAGTTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTCTGTACTTTTCATGGAGCTATGAAGGTTGAAGAGAGTTTGTGTCTTGTGGTGGATAAATGTTATGGATCGGTTCAATCTGAGATGCAGCGTAATGAAGGAAGACTCACTTTGGAGCAAGTTTTAAGATACGGGGCAGACATTGCACGAGGGGTTGTTGAGCTTCACGCTGCAGGCGTTGTTTGCATGAATTTAAAGCCTTCCAATCTGCTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCTCGACCTGAGTGTGACTCCACAAAGATCCATTCCTGTATGGAATGTATAATGCTTAGCCCACATTATACAGCACCAGAGGCTTGGGAACCTGTGAAGAAGTCATTAAATTTGTTTTGGGATGATGGAATAGGTATATCTCCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACTGGTGCCATTCCTTGGGCTGGCTTGAGTGCGGAGGAAATCTACCGAGCAGTTGTGAAGGCAAAGAAACAGCCTCCACAATATGCTAGTGTGGTTGGTGGTGGAATTCCGAGGGAGTTGTGGAAGATGATTGGAGAGTGCTTACAATTCAAACCATCTAAAAGACCTACTTTTAATGCAATGCTGGCAATATTTCTCCGTCATTTGCAAGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGACCTTGTTAAGGGCTCTGTATCAAATGTGGCAGAGCCTTCCCCAATACCTGAATTAGAAGTTCCTCAGGACCCAAATCGTCTTCATCAACTTGTGTCTGAAGGGGATGTCACTGGTGTTAGAGACTTTTTGGCAAAGGCGGCATCAGAGAATGGAAGTAACTACATATCTTCTTTGCTGGAAGCTCAAAATGCTGATGGACAAACGGCTCTCCATTTGGCCTGTAGACGTGGCAGTGCAGAATTAGTTGAGACAATTCTAGAGTATCAAGAAGCTAATGTTGATGTCTTGGACAAAGATGGGGATCCTCCTCTTGTTTTTGCCTTAGCAGCTGGGTCCCATGAGTGTGTTCGTAGCCTTATCAAAAGAAATGCTTGTGTGAGATCACGATTGAGAGATGGACTTGGCCCATCAGTAGCTCATGTTTGTGCCTATCATGGTCAGCCGGATTGTATGCGAGAGTTACTTTTAGCTGGAGCTGATCCCAATGCAGTGGATGATGAAGGTGAATCTGTACTGCATAGGGCAATTGCCAAGAAGTTCACAGACTGTGCTCTCGTGATAGTGGAAAATGGAGGCTGTAGATCGATGACCATCTTGAATTCAAAAAATCTGACACCGCTGCATTTGTGTGTAGCAACATGGAATGTTTCTGTTGTGAAGAGATGGGTGGAAGTTGCGACTTCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTATTGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAAGTGAGGGGAGAGACTTGGTGCGGATATTGCTTACAGCAGGAGCTGATCCATCTGCTCAAGATTCACAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACAAATGATGTGGACTTGGTTCAGGTTATTCTTGCTGCTGGTGTTGGTGTAAACATTCGCAATGTGCACAACAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTCGGACTGCTTCTAGCTGCTGGGGCAGATTATAACTTGCAGGATGATGATGGTGATAATGCTTTCCATATAGCAGCAGAAACAGCAAAAATGATACGTGAAAATCTGGACTGGCTTATTGTTATGCTAATGAATCCCGATGCCGATATTGAAGTCAGAAACCACAGTGGCAAGACACTACGGGATATTTTAGAGGCTCTACCCCGAGAATGGATATCTGAAGATCTGATGGAGGCACTCACAAATAGAGGAGTTCATTTATCTCCTACAATATTTGAAGTGGGAGATTGGGTGAAGTTTAAAAGAACTGTCACAACTCCAACATATGGGTGGCAAGGTGCTAGACCAAAGAGTGTTGGCTTTGTGCAAACTGTTCCAGACAGGGATAATCTCACTGTTTCATTTTGTTCTGGAGACGTTCATGTTCTTACAAATGAAGTTGTAAAAGTCGTTCCATTGGACAGGGGACAGCATGTACAACTGAAAGAAGATGTAAAAGAACCTAGGTTTGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACTGTGTTATGTGTTGACGAGGATGGCATTCTCCGTGTTGGGTTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGTGTTGAGGAGTTCAAGGTTGGAGATTGGGTTCGTATTCGTCCAACCCTTACATCTGCAAAGCATGGATTAGGATCTGTGACACCAGGAAGCATTGGTATTGTATATTGTATCCGACCTGACAGTAGTCTGTTAATTGAACTGAGCTATCTTCCAAATCCATGGCATTGTGAACCAGAGGAGGTTGAGCATGTTCCTCCTTTTAGGATTGGTGATAGGGTCTGTGTGAAGCGTTCTGTCGCAGAACCCAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGTGAGATTGAGAATGATGGTCTCTTAATAATAGAAATACCAAATCGTCCCATACCATGGCAAGCTGATGCATCTGATATGGAGAAGGTGGAAGATTTTAAGGTTGGAGATTGGGTCAGAGTGAAAGCTTCTGTATCTTCTCCAAAATATGGATGGGAGGATATTACAAGAAACAGTATTGGGGTAATTCATAGCTTGGAGGAGGATGGCGATATGGGTGTTGCCTTTTGCTTCAGAAGCAAGCCTTTTTCTTGCTCGGTTACTGATGTGGAGAAAGTTCCTCCTTTTGAGGTGGGACAAGAAATTCATGTGATGCAATCTGTTACTCAGCCACGGCTTGGGTGGTCTAATGAATCACCGGCTACTGTTGGAAAAATAGTGAGAATTGACATGGATGGCACTCTCAATGCGAGGGTCACTGGTAGGCAGAGCTTGTGGAAAGTATCACCTGGAGATGCCGAGCGACTTCCAGGATTTGAGGTTGGGGATTGGGTACGCTCTAAACCAAGCCTGGGAACTAGACCTAGTTATGATTGGAATAGTGTTGGGAGAGAGAGTCTAGCTGTTGTGCATAGTGTACAGGATTCTGGTTATTTGGAGTTGGCTTGCTGTTTCCGTAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTCCTAGCTTTAAAGTTGGGCAGTATGTTAGGTTCCGACTTGGTTTGGTTGAACCTAGGTGGGGCTGGAGAGGAGCTCAGCCTGAATCTCAAGGTATTATAACCAGTATTCACGCCGATGGAGAAGTCAGGGTTGCATTCTTTGGTTTGCCAGGACTGTGGAAAGGTGATCCTTCAGATCTGCAGGCAGAACAAATCTTTGAAGTGGGAGAGTGGGTGAGATTGAAAGAAAATGCAAACAATTGGAAATCAATTGGGCCAGGTAGTGTTGGCGTCGTTCAAGGAATAGGGTATGAAGGAGATGAAATTGATAGAAGCACTTTTGTTGGCTTTTGTGGGGAGCAAGAAAAATGGGTTGGACCAAGTTCTCATCTTGGAAGAGTTGACAAACTCTTTGTGGGACAGAAAGTTAAAGTTAAACAATATGTAAAACAACCTAGATTTGGGTGGTCGGGGCACACCCATGCTAGTATTGGTACTATACAAGCAATTGATGCTGATGGAAAGCTTCGAATATACACTCCAGCGGGTTCAAAAACATGGATGTTGGACCCATCAGAAGTTGAGGTGGTAGAAGAGAAGGATCTCTGTATTGGAGACTGGGTAAGGGTTAGAGCATCAGTTTCAACTCCAACCCACCATTGGGGGGAAGTGAGTCATTCAAGCGTTGGAGTGGTCCATCGAATGGAAGACGATAATCTATGGGTGTCATTCTGTTTTGTGGAGCGGTTATGGCTTTGTAAGGCAAGTGAAATGGAACGGGTTAGGCCGTACAAAGTGGGAGACAAAGTAAAGATCAGAGATGGACTGGTATCGCCGCGGTGGGGATGGGGAATGGAAACCCACGCCAGCAGGGGACAAGTTGTAGGAGTAGATGCAAATGGTAAACTAAGAATAAGGTTCCGATGGAGGGAAGGGAGGCCTTGGATAGGAGACCCTGCTGATATTGCCCTTGATGAAAACTGA 4887 0.4633 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCKECLSRMFSASSDATLTCPRCRHVSTVGNSVQALRKNYAVLSLIHSAAEAAAAGGGGRGSNFECDYTDDEEDGDGGDDGEVDDGDDEKRRRNSRGSQTSSSGGCAPVIEVGVHQDLKLVRRIGEGRRAGVEMWTAVIGGGRCRHHVAVKKAVMMEGMDLDWMLGKLEDLRRASMWCRNVCTFHGAMKVEESLCLVVDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSTKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISPESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVVKAKKQPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFNAMLAIFLRHLQEIPRSPPASPDNDLVKGSVSNVAEPSPIPELEVPQDPNRLHQLVSEGDVTGVRDFLAKAASENGSNYISSLLEAQNADGQTALHLACRRGSAELVETILEYQEANVDVLDKDGDPPLVFALAAGSHECVRSLIKRNACVRSRLRDGLGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKFTDCALVIVENGGCRSMTILNSKNLTPLHLCVATWNVSVVKRWVEVATSDEIAEAIDIPSPIGTALCMAAASKKDHESEGRDLVRILLTAGADPSAQDSQNGRTALHTAAMTNDVDLVQVILAAGVGVNIRNVHNSIPLHLALARGAKACVGLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENLDWLIVMLMNPDADIEVRNHSGKTLRDILEALPREWISEDLMEALTNRGVHLSPTIFEVGDWVKFKRTVTTPTYGWQGARPKSVGFVQTVPDRDNLTVSFCSGDVHVLTNEVVKVVPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDEDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVPPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADASDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHSLEEDGDMGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVMQSVTQPRLGWSNESPATVGKIVRIDMDGTLNARVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGTRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSFKVGQYVRFRLGLVEPRWGWRGAQPESQGIITSIHADGEVRVAFFGLPGLWKGDPSDLQAEQIFEVGEWVRLKENANNWKSIGPGSVGVVQGIGYEGDEIDRSTFVGFCGEQEKWVGPSSHLGRVDKLFVGQKVKVKQYVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKTWMLDPSEVEVVEEKDLCIGDWVRVRASVSTPTHHWGEVSHSSVGVVHRMEDDNLWVSFCFVERLWLCKASEMERVRPYKVGDKVKIRDGLVSPRWGWGMETHASRGQVVGVDANGKLRIRFRWREGRPWIGDPADIALDEN* 1629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5090 1628 CDD RING-HC_ScPSH1_like 5 52 - -
Psa5g5090 1628 Pfam RING-type zinc-finger 6 49 IPR027370 -
Psa5g5090 1628 ProSiteProfiles Ankyrin repeat region circular profile. 730 761 - -
Psa5g5090 1628 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 1627 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Psa5g5090 1628 SUPERFAMILY RING/U-box 5 58 - -
Psa5g5090 1628 Pfam Ankyrin repeats (3 copies) 706 794 IPR002110 GO:0005515
Psa5g5090 1628 Pfam Ankyrin repeats (3 copies) 495 575 IPR002110 GO:0005515
Psa5g5090 1628 SMART ring_2 6 51 IPR001841 -
Psa5g5090 1628 MobiDBLite consensus disorder prediction 99 132 - -
Psa5g5090 1628 PRINTS Ankyrin repeat signature 516 531 IPR002110 GO:0005515
Psa5g5090 1628 PRINTS Ankyrin repeat signature 712 726 IPR002110 GO:0005515
Psa5g5090 1628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Psa5g5090 1628 ProSiteProfiles Ankyrin repeat profile. 730 762 IPR002110 GO:0005515
Psa5g5090 1628 Pfam Mind bomb SH3 repeat domain 1247 1368 IPR040847 -
Psa5g5090 1628 Pfam Mind bomb SH3 repeat domain 995 1115 IPR040847 -
Psa5g5090 1628 Pfam Mind bomb SH3 repeat domain 1504 1622 IPR040847 -
Psa5g5090 1628 Pfam Mind bomb SH3 repeat domain 1374 1495 IPR040847 -
Psa5g5090 1628 Pfam Mind bomb SH3 repeat domain 1121 1239 IPR040847 -
Psa5g5090 1628 Pfam Mind bomb SH3 repeat domain 871 989 IPR040847 -
Psa5g5090 1628 ProSiteProfiles Ankyrin repeat region circular profile. 515 537 - -
Psa5g5090 1628 Gene3D - 584 644 IPR036770 -
Psa5g5090 1628 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Psa5g5090 1628 ProSiteProfiles Ankyrin repeat profile. 515 548 IPR002110 GO:0005515
Psa5g5090 1628 Pfam Ankyrin repeats (many copies) 587 634 IPR002110 GO:0005515
Psa5g5090 1628 SMART ANK_2a 730 759 IPR002110 GO:0005515
Psa5g5090 1628 SMART ANK_2a 652 683 IPR002110 GO:0005515
Psa5g5090 1628 SMART ANK_2a 584 613 IPR002110 GO:0005515
Psa5g5090 1628 SMART ANK_2a 515 545 IPR002110 GO:0005515
Psa5g5090 1628 SMART ANK_2a 549 578 IPR002110 GO:0005515
Psa5g5090 1628 SMART ANK_2a 617 648 IPR002110 GO:0005515
Psa5g5090 1628 SMART ANK_2a 763 792 IPR002110 GO:0005515
Psa5g5090 1628 SMART ANK_2a 690 725 IPR002110 GO:0005515
Psa5g5090 1628 SMART ANK_2a 796 831 IPR002110 GO:0005515
Psa5g5090 1628 Gene3D - 645 764 IPR036770 -
Psa5g5090 1628 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Psa5g5090 1628 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 1627 - -
Psa5g5090 1628 Pfam Protein kinase domain 150 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5090 1628 SUPERFAMILY Protein kinase-like (PK-like) 143 449 IPR011009 -
Psa5g5090 1628 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Psa5g5090 1628 ProSiteProfiles Protein kinase domain profile. 146 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g5090 1628 ProSiteProfiles Ankyrin repeat profile. 763 795 IPR002110 GO:0005515
Psa5g5090 1628 Gene3D Transferase(Phosphotransferase) domain 1 229 450 - -
Psa5g5090 1628 SUPERFAMILY Ankyrin repeat 506 838 IPR036770 -
Psa5g5090 1628 Gene3D - 470 583 IPR036770 -
Psa5g5090 1628 Gene3D - 765 862 IPR036770 -
Psa5g5090 1628 ProSiteProfiles Ankyrin repeat region circular profile. 763 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5090 Psa-Chr5 446749144 446763083 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5090 208 429 MAP Kinase Kinase Kinase AT2G31800 29.646 1.56e-16 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Psa5g5090 Pkinase 2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5090 K16279 - gmx:100782956 2998.38