Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5089 ATGAATTTGTCAACCATTCCAAAAGTTGAAGTTGTAGAGAAATGTGTAAACAATATCCATGAAAATATTGTTCAACATGGGGAAGGGGAAGAGTGTGTTGTTGATTATACACCGCATTTAGAAATGGAGTTTGAATCCGAGGTAGCGGCGTATGAATTTTATAATGAGTATGGCAGGGTAACTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGTAGAAAAGATGGAACTTTGACTTCGAGAAGATTCACATGTTTTAAAGAGGGTAAACGGATTGTTGACAATCGGAGCAACTTGGTAAAAGAGGGTAGAGTAGAAACTAGAACGGGATGTAATGCTCGTATGGTTATTTCACTTGATCGAAAGATTGGGAAATATAAGGTTGTTGATTTTGTAGCTCAACATAATCATGCTCTTCTACCGCCAGGGTATGTTAATATGATTCGCTCCCATCGACGCATATCTGAGTCACAAACATCTCAAATTGCAATGGGTGATGAATCTAGATTAAAACAAAAAGTTTTTCGAAAAGAAGTTTCCAAGCAAGTTGATGGAATGGATGATATTGGTTATACAAGACAAGAAAGGAAGAATTATCTTCCAACTAGAAGGGCGCAGTCCTTAATGTATGGTGAGATAAGAGCAAATGCCATGAAGCATGTGAACCATCTCTATCAAAAGGGTTCACAATTTTGCTCGGATTTTGAAGCATGCATTGATCTACATGAAGAGGAAGGTGAGTTTTTGAATGCATGGAATTGTTTACTTGCTGAACATAATGTTTCTAAAGATTCATGGCTTCATACAATTTTTCAACGGAAGGAAAAATGGGCATGGACGTACGTTAGAAAAAAATTCTCAGCAGGTATGCGTTCTATTCAATTAAGTGAGAGTTTTAATTATGAGTTGAAAAATCATTTGAAATCAGATTTAAATTTAGTACAATTTTTCACACACTTTGAAAGAGTTGTCAATAAACAACGGAACAATGAGTCAGAAGCCGATTATGAGTCAAGACACGAGTTGCCTAAATTGAAAATGAAAAGAGCTCCAATGCTTGTACAAGCTGGAAGCATTTACACTCCAACAATCTTTGAAGAATTTCAAGAAGAGTATGAAGAATATCTAGGCACTTGCGTAAAGAATTTGGATGAAGGGTTGTATGTTGTTACAAACTATGATAATAGTAAGGAGCGGATGGTAATAGGGAATCTTGAGGATCCTCAAAAGGTTGTTTGTGATTGTCATAAATTTGAGACGTATGGTATCTTATGCAGTCATGCTATAAAAGTTTTAGATGTTATGAATATTAAGTTAATTCCTCAACACTATATACTGAAGCGATGGACAAGAGATGCAAGGTTAGGAAGTAGTCCAGATTTAAAAAGGCAACATATTGAATTGGATATAAAAGCCCATTTCATGGAGCGATACAATGAGTTATGTCCTCGAATGGTTAAATTGATCAACAAAGCATCAGAATCTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCTGATAAAACAATTGATGATATGTCTGCTAAAAGGTTTGTGGGTGGAGAATCACTTGAAATGCGACATGCATCCATATCCATCGGCAATGAAAAAATTGACAACAATGTGGAAACTGTTGATGTTGATGGAGAAAAGAGTATAAAGAAGTCGAGATTGCTCAAATCACAACATCCAGAAATGAAGTTTGCAATGCGTTACATTGCACATCTTTCCGAGTTGCGAAATCGAGGAAAGTGTCTTCCGCGTCACATCTCTCTTGAAAACCTTGAGATTTCAGATTGTCGCCATGAATCTTTACCAGAAAAAGGACTGTCTGCCTCTCATTCGGTACTGACTATTAAGTGCTGCCTTCTACCACAAGCAAGTTGTCAGAACAATGGAGGGAAAGAGTGGCATAAGATTGCACATATGAATAATCAGCAAAGAAAGAAGCCAACTATGAATGTTCACAAGACTTGCTTTCCAATAAGTTCTCAAGTCATGGAAATGTACATTGCTGCCAAAGATGAATGGGAGGTTGAAGAAGTTGGTCGAGTCTTGGCTCATCAATTTCATGTTTGA 2091 0.3663 MNLSTIPKVEVVEKCVNNIHENIVQHGEGEECVVDYTPHLEMEFESEVAAYEFYNEYGRVTGFGIRREYGNKSRKDGTLTSRRFTCFKEGKRIVDNRSNLVKEGRVETRTGCNARMVISLDRKIGKYKVVDFVAQHNHALLPPGYVNMIRSHRRISESQTSQIAMGDESRLKQKVFRKEVSKQVDGMDDIGYTRQERKNYLPTRRAQSLMYGEIRANAMKHVNHLYQKGSQFCSDFEACIDLHEEEGEFLNAWNCLLAEHNVSKDSWLHTIFQRKEKWAWTYVRKKFSAGMRSIQLSESFNYELKNHLKSDLNLVQFFTHFERVVNKQRNNESEADYESRHELPKLKMKRAPMLVQAGSIYTPTIFEEFQEEYEEYLGTCVKNLDEGLYVVTNYDNSKERMVIGNLEDPQKVVCDCHKFETYGILCSHAIKVLDVMNIKLIPQHYILKRWTRDARLGSSPDLKRQHIELDIKAHFMERYNELCPRMVKLINKASESHETYTFLSKVYEESDKTIDDMSAKRFVGGESLEMRHASISIGNEKIDNNVETVDVDGEKSIKKSRLLKSQHPEMKFAMRYIAHLSELRNRGKCLPRHISLENLEISDCRHESLPEKGLSASHSVLTIKCCLLPQASCQNNGGKEWHKIAHMNNQQRKKPTMNVHKTCFPISSQVMEMYIAAKDEWEVEEVGRVLAHQFHV* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5089 696 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 215 521 IPR031052 GO:0006355
Psa5g5089 696 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 35 214 IPR031052 GO:0006355
Psa5g5089 696 ProSiteProfiles WRKY domain profile. 67 141 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g5089 696 PANTHER OS04G0421700 PROTEIN 35 214 - -
Psa5g5089 696 PANTHER OS04G0421700 PROTEIN 215 521 - -
Psa5g5089 696 Pfam SWIM zinc finger 397 434 IPR007527 GO:0008270
Psa5g5089 696 ProSiteProfiles Zinc finger SWIM-type profile. 399 437 IPR007527 GO:0008270
Psa5g5089 696 Pfam FAR1 DNA-binding domain 52 142 IPR004330 -
Psa5g5089 696 SMART 26again6 412 439 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5089 Psa-Chr5 446604572 446607503 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Psa5g5089 FAR1 2.9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5089 - K17604 cam:101493311 549.28