Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5040 ATGATGGAGATGGAGATACATCAAGAAAACTCTGAAATCAACGGTATACCGGGGTCAGCATCTTGCCTATACGATCTCTTTTGTACCGAAACACCGAGTTTGAATTCTCAAAGTCAAAGAGAGCGATGGATGATATCTGGTCCACAAGAAAGATTAGACAATCTGATGCGTCAAGCGGGGAACAAGTACTGCGCTGATTGTGGATCGTCGGATCCAAAATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGTATACATAGAAGCCTTGGAGTCCATATATCTAAGGTTCTGTCACTGAATCTAGATGACTGGACAGATGAACAAGTTGATTCATTGGTCAACTTGGGTGGAAATACAGTAATCAATAAGAAGTACGAAGCTTGCTTGCCGACTTACGTAAAAAAACCAAAACCAAATTCTTCTATCGATGAGCGCTCTGATTTTATTAGGAGAAAATACGAGTTCCTACAATTTTTGGATTCTGAGGAGAATTTGTCGTGTCCCTTTATACCATCCCATGGAAGAACTTCTTCATCCGGTCAGAGCAGTTCCTCAAACAACATTCCTCTACCCGAAAAAAAACGTTATGATAAACAAACAACTAAAAACCGTATCGGGCTATCGTTTCGAAACAGCTGGGGAAGAAAAGATTCTGAGAACAGGACTGCAAAGAAGAGTACCTCGTTGGCAGGTATGGTTGAATTTGTTGGGTTGGTAAAAGTTAACGTGGTTAAAGGCACAAACCTAGCTATCAGAGATATAGTCACTAGTGACCCTTATGTCATCCTTTCCCTCGGTAACCAATCGGTGAAAACGCGTGTCATAAAGAACAATTTAAATCCAGTTTGGAATGAAAGCCTAATGTTGTCAATTCCTGAGAGCATTCCTCCTCTTAAAGTGATTGTATACGACAAAGATGCATTCAAAAACGACGATTTTATGGGTGAGGCTGAAATAGACATTCAACCACTAGTGTCAGCAGCAAAAGCATATGAGAAATCATCAATCAATGAGTCAATGCAGCTTGGAAAATGGGTAGCAAGTGGTGAAAACACACTTGTGAAAGATGGAATAATCTCACTTGAAGAAGGAAAAGTGAGACAAGAAATCTCATTGAGGCTACAAAATGTTGAGAGAGGTGTGCTTGAAATTGAACTTGAATGTGTTCCTCTTACACAATAG 1197 0.4002 MMEMEIHQENSEINGIPGSASCLYDLFCTETPSLNSQSQRERWMISGPQERLDNLMRQAGNKYCADCGSSDPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLNLDDWTDEQVDSLVNLGGNTVINKKYEACLPTYVKKPKPNSSIDERSDFIRRKYEFLQFLDSEENLSCPFIPSHGRTSSSGQSSSSNNIPLPEKKRYDKQTTKNRIGLSFRNSWGRKDSENRTAKKSTSLAGMVEFVGLVKVNVVKGTNLAIRDIVTSDPYVILSLGNQSVKTRVIKNNLNPVWNESLMLSIPESIPPLKVIVYDKDAFKNDDFMGEAEIDIQPLVSAAKAYEKSSINESMQLGKWVASGENTLVKDGIISLEEGKVRQEISLRLQNVERGVLEIELECVPLTQ* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5040 398 MobiDBLite consensus disorder prediction 178 195 - -
Psa5g5040 398 ProSiteProfiles C2 domain profile. 220 340 IPR000008 -
Psa5g5040 398 SMART C2_3c 243 338 IPR000008 -
Psa5g5040 398 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 4 398 IPR044518 GO:0005096|GO:0005543
Psa5g5040 398 CDD ArfGap 52 158 - -
Psa5g5040 398 Pfam C2 domain 243 333 IPR000008 -
Psa5g5040 398 Gene3D C2 domain 240 395 IPR035892 -
Psa5g5040 398 SUPERFAMILY ArfGap/RecO-like zinc finger 49 164 IPR037278 -
Psa5g5040 398 CDD C2_ArfGAP 241 385 - -
Psa5g5040 398 Gene3D Arf GTPase activating protein 32 171 IPR038508 -
Psa5g5040 398 Pfam Putative GTPase activating protein for Arf 50 165 IPR001164 GO:0005096
Psa5g5040 398 PRINTS HIV Rev interacting protein signature 61 80 IPR001164 GO:0005096
Psa5g5040 398 PRINTS HIV Rev interacting protein signature 80 97 IPR001164 GO:0005096
Psa5g5040 398 PRINTS HIV Rev interacting protein signature 101 122 IPR001164 GO:0005096
Psa5g5040 398 SMART arf_gap_3 50 171 IPR001164 GO:0005096
Psa5g5040 398 MobiDBLite consensus disorder prediction 178 202 - -
Psa5g5040 398 ProSiteProfiles ARF GTPase-activating proteins domain profile. 49 171 IPR001164 GO:0005096
Psa5g5040 398 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 239 333 IPR035892 -
Psa5g5040 398 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 4 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5040 Psa-Chr5 444674055 444678108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5040 49 398 C2H2 Transcription Factor Family AT4G05330 48.286 3.14e-117 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5040 K12486 - gmx:100799376 661.759