Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5036 ATGGCATCTAGTAATCCATTCTTTGATGATATACGGAGCAGATCAGGGGTTGATCCTCCTCAAACTGAAGATTCAACAGAAATTCCTGAACTCATAAATGATCCTATACAGACTGTTGTTAAACCTAATGGAACTGTTTCGAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTGTGCTTGAATGCTATGTACCCTCCAATACACCAGTGCTCGAATGGTCACACTTTATGCTCTGGGTGCAAACCAAGAGTCCATGACCGGTGTCCTACATGTCGGCACGAGCTTGGAAATATTAGGTGTCTGGCATTGGAGAAGGTGGCTGCTTCTTTAGAACTTCCTTGTAAATATCAAGGTTTTGGGTGCATAGGCATATACCCTTATTACAGCAAGCTAAAACATGAGTCTCAGTGTGCATTTAGACCTTATAACTGTCCATATGCTGGTTCGGAATGTGCTGTCGTGGGTGATATAAGGTTCTTGGTGGCACACCTCAAAGATGATCACAAAGTGGATATGCACAGTGGTTGCACTTTTAATCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACTTGGATGTTAACGGTTTTTAGTTGCTTCGGTCAGTATTTCTGTCTACATTTCGAAGCTTTTCAACTGGGAATGGCTCCGGTCTACATAGCATTTTTACGTTTTATGGGCGATGATAATGACGCAAAGAACTATACCTACAGTCTCGAGGTAGGCGGAAACGGAAGGAAGATGACATGGCAAGGGGTGCCTAGAACAATTCGGGATAGTCATCGCAAGGTTCGCGACAGTTTTGACGGTCTGATCATTCAGAGGAACATGGCTCTCTTCTTCTCTGGCGGTGACAGGAAGGAATTGAAACTTCGAGTAACCGGAAGGATTTGGAAAGAACAATGA 915 0.4372 MASSNPFFDDIRSRSGVDPPQTEDSTEIPELINDPIQTVVKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAFRPYNCPYAGSECAVVGDIRFLVAHLKDDHKVDMHSGCTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYTYSLEVGGNGRKMTWQGVPRTIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5036 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 160 IPR013083 -
Psa5g5036 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 7 304 - -
Psa5g5036 304 SUPERFAMILY RING/U-box 48 96 - -
Psa5g5036 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Psa5g5036 304 CDD RING-HC_SIAHs 54 92 - -
Psa5g5036 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Psa5g5036 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 7 304 - -
Psa5g5036 304 SUPERFAMILY TRAF domain-like 109 301 - -
Psa5g5036 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 297 IPR008974 GO:0005515
Psa5g5036 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Psa5g5036 304 CDD Sina 170 298 - -
Psa5g5036 304 MobiDBLite consensus disorder prediction 1 29 - -
Psa5g5036 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 107 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g5036 Psa-Chr5 444381620 444383598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5036 47 304 C3H Transcription Factor Family AT2G41980 78.682 2.40e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g5036 K04506 - gmx:100793457 600.127