Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4997 ATGTCCACCACCGATTCCATTCCGAATCACAAACTCTGTGGTTTCCTCTCCACCGTTCTCACACTCATTCCGAATCACAACTCCAACGACGCGCGTTTCAACGACCGCTGCGAGATCTTCAACGACGGAACCTCCACTGGGTTCTGTACTCAAAACGGCGTCGTTTTAATCCCTATCGCTGATTCGGAAGAATGCAAGAGTCCGAAGGGGAAGAGGAAGAAGATTGGGACGGTGAATGGGAGCTTCAGCGTTGTTCATCAGCTTCATGCTTTGGTTGTTCGGAGATGTTTGGAGATTGATGCTCGTGTGTTGTGTGTTGTGGAGGTTTTGGATAGGGTTAGGGTTGTGGTTCTCGTGGATGTTTATCTTCCGGTTCGGGTTTGGTCTGGCTGGCAGTTTCCGAAATCTGGTTCTGTTGCTGGTGCTGTTTTTCGCCATTTGAGGTGTGATTGGGATGAGAGAAGATCAATGCTTTCTGATCCAGACTACTGTAGGAAGACACATGGAGAAAATGAGAGCATTTGGAACCTTTCTGTTTGCCACGTACTTGATTGCAAGCTCCATTCCCCTGTGAGAGATTCTTCAAGGGAAATGCTATTTGAACTTCATGAAATTTTTAAGACAGTACCTTCACCTTGTATAGGAAAACAGCAACAGATTAATATTTCAAAGATAATACCTATGGACAACACTTGCAAATCTGGGATTTGGGAGATCTCCGATGATATTTTAATTAAAATTATATCTTCCCTGGGTCCATTGGACCTCACTAGGGTTTCTGGAACGTGTCAACATCTAAGATCCTTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCACCGTGAGCGAAATGCTGAACTTTTGCTACATCCTTTATATGTAGCTCTTTCAACTGACGATGGCTTTAGTTTTCATGTAAATACTGTATCTGGTGATATAGTCATCGGGGAAGCTCCTACCATCAAAGATTTTCGCGGAGGAATGTTTTGTGACGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTTTCTCTTATCACAAAGACACAAGGTACGTTGGCGGATCCACCAGATGGGCCACAAGTAGTCTGGTGTCAACATAGCTCTACCCAAAAATGTGGCTATTATGAGATCAGTGGTAATAACATCACTAGTTGTACCATCTTGGGCAAGAGGGATGTGTGCCAAAATAATGAGAACCATGGTTACTCCTCAAAAAGAGCCATGTTGTTAAATCCTTGTCAGGAAATCACTAAACCTCGTGAATCATCTTCTGTAGGTGAAAACAAATCACCTGTAGATGTCTGCTTTGAGGAATATACACCTGCTAGTCGAGGCACTAGAAGCTTCGTCCGAGTAAAGAAAAACTTAGATTTCACATATGACGAGGAAGCTATAATTTTCAAAGAAAGAAGAGTTGGTAAAAGACCAATTAAAACAAAACATGCATCGGATGTGGCATCCCATATGTCTCAAAACAAGTTTGTTGATACTTCAAATGTTACTGGGCAGAGTTACAAGTGGCATGGGAAGCGTAAAGCTGATTGTTTGGAATATAGTGATAATTGGATTCAGTGTGATGCTTGTCACAAATGGCGAAAACTTGCAGACAATAGTTTGGATAATTCTATTGCAGCATGGTTTTGTAGGATGAACACTGACCCTTCATATCAGAGTTGTAGAGTCCCAGAACAGTATATTCAGAATAGCTGTGAGATAACTTACTTGCGAGGATTTCATTTGAAAGGAACTCCTGGAGGTGAGAAACAAAACGTTTCATTTTTTACCAGTGTGCTTAAGGAGCACTGTTCATTGGTGAATTCTCAGACAAAGAAGGCCCTGATTTGGTTGACCAAAATTTCGATGGACAAGCTTGCAGTAATGGAAACAAATGGTATACGGGGTCCTATTTTAAACAATTGCACTTTGTCTAATGGGACTTTGAATCCATACCACAAAATATTTAAAGCATTTGGCCTCATAAAGAGTGTAGAGAAAGGTGTATGCAAGTGGTTCTACCCGCAAAATCTTAGCAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTATGCGAGCCATTAGATTTGGTTAGGTTATACTTGTCAAGAGCAACCTTGGTAGTTGTTCCTGCAAACTTGGTCGATCATTGGAAAGCACAAATAGAAAAACATGTTAGTCCTGGTCAATTGCAGGTTTATGTTTGGAAAGATCATCAGAAACCATCTGCACACTCTCTTGCCTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTGAGTGCAGAGTGGGGGCCACGTAAGAGGAGTGCTCTAATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAGGGGCATACTCTTGGCTCAAGTCTGAGCTTAACAAACAAGTTACAAATGGCTATTTCACTGGTTGCTTCAAATCGATGGATACTAACTGGAACTCCCACACCTAACACTCCTAACAGCCAACTTACGCATCTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGGCTGAATCAAAAGTCATGGGATGCTGGCGTGCTTAGGCCATTTGAGGCAGAGATGGAAGAAGGCCGATCTCGTCTGTTGAATTTACTTCAGAAATGCCTTATTAGTGCTAGAAAGGTAGATTTACAAAGTATTCCACCATGCATCAAGAAAATTGTTTTACTAGATTTTAATGAGGAACATGCTAGAAGTTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGACCCTTCACATGTGGAGAGTCTATTGAATCCAAAACAGTGGAAATTTCGTAGTGAAACTTTAAAAAATGTCAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACACGCCGGAGAAGATATTCAGGAAGCAATGGATCTGTTAGTACAAAATGGTTTAGATTCTACTACAGGGGAGTATACCTCCATAAGATACAGTCTCCTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGTCGCCTTCCTCTCATTACTCCATGTCGACATCTGCTGTGCCTTGGTTGTGTTTCCTTAGACAAGACAAAATGTACATATCCTGGCTGTGATAACTTATATGAGATGCAGAGTCCTGATACAATGGCACGGCCAGAAAATCCTAACCCAAAGTGGCCGGTACCGAAAGATCTTATTGAGTTACAACCTTCATACAAGCAGGATACGTGGGATCCTGATTGGCAATCGACATCTAGTAGTAAAGTTGCATATCTTGTTCGGAGGTTGAAAGCCTTGCAAGGAACTAATGAGGAAATGAGTTCATATATAGACAGTAGCAATAATGAGATGCATATTGAGAATAGTTTTCCTTTGCACACAAGACATGCCGAATCATCATTCCAGGAATGTTCTACAAGTAGAACAAGCACCAATGTGCTCCCTGAAAAAGTCTTGATATTTTCTCAGTTTCTTGAGCATATACACGTCATTGAACAGCAGTTGACTGTTAATGGTATCAAATATACTGGAATGTACAACCCAATGCATTCTACCCACAAGAAAAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGGAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACATGTATTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCCCATCGTATGGGTGCTTCTCGCCCTATTCACGTGGAAACATTAGCGATGCGTGGTACAATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAAATGTAGAAGATTTCATAATAAAGATGTTAAATCTGAAGATGGCGCGGGACGGGGATATCGATCGGTGCATGATTTTGCCGAAAGCAATTATCTACTGGAACTTAAATTTGTATAA 3963 0.4151 MSTTDSIPNHKLCGFLSTVLTLIPNHNSNDARFNDRCEIFNDGTSTGFCTQNGVVLIPIADSEECKSPKGKRKKIGTVNGSFSVVHQLHALVVRRCLEIDARVLCVVEVLDRVRVVVLVDVYLPVRVWSGWQFPKSGSVAGAVFRHLRCDWDERRSMLSDPDYCRKTHGENESIWNLSVCHVLDCKLHSPVRDSSREMLFELHEIFKTVPSPCIGKQQQINISKIIPMDNTCKSGIWEISDDILIKIISSLGPLDLTRVSGTCQHLRSLAASVMPCTKLNLFPHQQAAVEWMLHRERNAELLLHPLYVALSTDDGFSFHVNTVSGDIVIGEAPTIKDFRGGMFCDEPGLGKTVTALSLITKTQGTLADPPDGPQVVWCQHSSTQKCGYYEISGNNITSCTILGKRDVCQNNENHGYSSKRAMLLNPCQEITKPRESSSVGENKSPVDVCFEEYTPASRGTRSFVRVKKNLDFTYDEEAIIFKERRVGKRPIKTKHASDVASHMSQNKFVDTSNVTGQSYKWHGKRKADCLEYSDNWIQCDACHKWRKLADNSLDNSIAAWFCRMNTDPSYQSCRVPEQYIQNSCEITYLRGFHLKGTPGGEKQNVSFFTSVLKEHCSLVNSQTKKALIWLTKISMDKLAVMETNGIRGPILNNCTLSNGTLNPYHKIFKAFGLIKSVEKGVCKWFYPQNLSNLTFDVAALGMALCEPLDLVRLYLSRATLVVVPANLVDHWKAQIEKHVSPGQLQVYVWKDHQKPSAHSLAWDYDVVITTFSRLSAEWGPRKRSALMQVHWFRIILDEGHTLGSSLSLTNKLQMAISLVASNRWILTGTPTPNTPNSQLTHLQPLLRFLHEEAYGLNQKSWDAGVLRPFEAEMEEGRSRLLNLLQKCLISARKVDLQSIPPCIKKIVLLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSETLKNVRLSCCVAGHIKVTHAGEDIQEAMDLLVQNGLDSTTGEYTSIRYSLLYGGHCVRCKEWCRLPLITPCRHLLCLGCVSLDKTKCTYPGCDNLYEMQSPDTMARPENPNPKWPVPKDLIELQPSYKQDTWDPDWQSTSSSKVAYLVRRLKALQGTNEEMSSYIDSSNNEMHIENSFPLHTRHAESSFQECSTSRTSTNVLPEKVLIFSQFLEHIHVIEQQLTVNGIKYTGMYNPMHSTHKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLEFLQDADKCRRFHNKDVKSEDGAGRGYRSVHDFAESNYLLELKFV* 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4997 1320 CDD DEXDc_SHPRH-like 707 889 - -
Psa5g4997 1320 SMART helicmild6 1172 1254 IPR001650 -
Psa5g4997 1320 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 35 1311 - -
Psa5g4997 1320 Pfam Helicase conserved C-terminal domain 1157 1254 IPR001650 -
Psa5g4997 1320 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 683 848 IPR014001 -
Psa5g4997 1320 Gene3D - 530 583 - -
Psa5g4997 1320 Gene3D - 1056 1305 IPR027417 -
Psa5g4997 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 887 IPR027417 -
Psa5g4997 1320 Pfam CW-type Zinc Finger 535 578 IPR011124 GO:0008270
Psa5g4997 1320 ProSiteProfiles Zinc finger CW-type profile. 530 581 IPR011124 GO:0008270
Psa5g4997 1320 SUPERFAMILY F-box domain 231 272 IPR036047 GO:0005515
Psa5g4997 1320 CDD SF2_C_SNF 1159 1264 - -
Psa5g4997 1320 PANTHER OS01G0952200 PROTEIN 35 1311 - -
Psa5g4997 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 790 1280 IPR027417 -
Psa5g4997 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 362 IPR027417 -
Psa5g4997 1320 Gene3D - 700 892 IPR038718 -
Psa5g4997 1320 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1148 1293 IPR001650 -
Psa5g4997 1320 Pfam SNF2-related domain 284 946 IPR000330 GO:0005524|GO:0140658
Psa5g4997 1320 SMART ultradead3 277 859 IPR014001 -
Psa5g4997 1320 ProSitePatterns Zinc finger RING-type signature. 1026 1035 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4997 Psa-Chr5 442799616 442806928 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4997 281 359 RAD5 or RAD16-like Gene Family AT5G22750 34.884 8.24e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa5g4997 SNF2_N 2.8e-97 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4997 - - gmx:100803102 2036.92